SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22707

Length: 174 nt

UniGene Fasta

>biog3_v1.0_unigene22707
AATGTATTCATTACCCATGAGCTGCCTCTTGCAGATATTAACAAATCATTTGATTTGTTGTCAGAAGGCCAGAGTTTGAGATGTGTTCTCCATCTCTAACCAAATATATTTTCCATTTTCTTCTACCCAGCAACGATATATGCAGGAGATAGTCAATTTCGCTATTTCTAATAT

Ace file of the UniGene biog3_v1.0_unigene22707

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16132	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	alcohol dehydrogenase, putative [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	alcohol dehydrogenase-like 3	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase	IPR014183	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ44

Fln msg: your sequence is shorter than subject: 33 - 405

Fln protein: NVFITHELPLADINKSFDLLSEGQSLRCVLHL*

Protein Length: 34

Fln nts: AATGTATTCATTACCCATGAGCTGCCTCTTGCAGATATTAACAAATCATTTGATTTGTTGTCAGAAGGCCAGAGTTTGAGATGTGTTCTCCATCTCTAA___CCAAATATATTTTCCATTTTCTTCTACCCAGCAACGATATATGCAGGAGATAGTCAATTTCGCTATTTCTAATAT

Fln Alignment:

biogeco3_mira_c21533___FITHELPLADINKSFDLLSEGQSLRCVLHL
A9NZ44__________________FITHELPFSEINRAFELLLEGSCLRCVLHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain