SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22661

Length: 280 nt

UniGene Fasta

>biog3_v1.0_unigene22661
AATGTACATGGATATATCACTTGAAGCATAAGGATGAGGCCTTCAATTTGTTCAAGGATTTCAAGGCTTTGGTCGAAAATCAAATAGGGAAGAAAATTAAGATCTTCATGTCTGACAACGGTAGAAAGTACATTTCAAATGAATTCATAGACTTTTGCAAGAAGGAAAGCATCAAGGAGACGATTGTGCCCTACAATCCCCAACAAAATGGAGTGGTTGAGAGAAAGAATAGGTCTATTGTAGAAGCGGCTCAAGTCATGTTCCATGTTCAAAGGCTGTC

Ace file of the UniGene biog3_v1.0_unigene22661

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene54889	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA	-	-	1.0e-18	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	uncharacterized protein loc100801364	-	-	2.83556e-27	67%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 92 - 407

Fln protein: CTWIYHLKHKDEAFNLFKDFKALVENQIGKKIKIFMSDNGRKYISNEFIDFCKKESIKETIVPYNPQQNGVVERKNRSIVEAAQVMFHVQRL

Protein Length: 93

Fln nts: AATGTACATGGATATATCACTTGAAGCATAAGGATGAGGCCTTCAATTTGTTCAAGGATTTCAAGGCTTTGGTCGAAAATCAAATAGGGAAGAAAATTAAGATCTTCATGTCTGACAACGGTAGAAAGTACATTTCAAATGAATTCATAGACTTTTGCAAGAAGGAAAGCATCAAGGAGACGATTGTGCCCTACAATCCCCAACAAAATGGAGTGGTTGAGAGAAAGAATAGGTCTATTGTAGAAGCGGCTCAAGTCATGTTCCATGTTCAAAGGCTGTC

Fln Alignment:

biogeco3_mira_c21475___WIYHLKHKDEAFNLFKDFKALVENQIGKKIKIFMSDNGRKYISNEFIDFCKKESIK-ETIVPYNPQQNGVVERKNRSIVEAAQVMFHVQRL
B8LKX7__________________WVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain