SustainPineDB

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Assembly info
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SSRs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22595

Length: 203 nt

UniGene Fasta

>biog3_v1.0_unigene22595
AATGTCCCTCCCTTCAAGAACCTGGTTGCAGACATGATAGTGCAGGGTAGTAAGATTGTCAATGGTATGATCAGCTCCTCCATATTTGTAATGACATGAGGGACGAGGAACTGGGTTGGATCTTGGCTCGCGACGGTTTATTCCTTTTGCGATTCTTAAGGAAGATCTTCACCCGCGAGTGGGAGTGTGATCAAGCAACTCGC

Ace file of the UniGene biog3_v1.0_unigene22595

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8561	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF247 domain containing protein	-	-	1.0e-28	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	protein	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF247, plant	IPR004158	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUU0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 315 aas, your sequence is shorter than subject: 67 - 462

Fln protein: CPSLQEPGCRHDSAG**DCQWYDQLLHICNDMRDEELGWILARDGLFLLRFLRKIFTREWECDQATR

Protein Length: 68

Fln nts: AATGTCCCTCCCTTCAAGAACCTGGTTGCAGACATGATAGTGCAGGGTAGTAAGATTGTCAATGGTATGATCAGCTCCTCCATATTTGTAATGACATGAGGGACGAGGAACTGGGTTGGATCTTGGCTCGCGACGGTTTATTCCTTTTGCGATTCTTAAGGAAGATCTTCACCCGCGAGTGGGAGTGTGATCAAGCAACTCGC

Fln Alignment:

biogeco3_mira_c21376___QWYDQLLHICNDMRDEELGWILARDGLFLLRFLRKIFTREWECDQATR
A9NUU0__________________QWY-RTFHVCPDS-DEELAWILARDGLFLLRFLRKIFTRDWDCDQATR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain