SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22588

Length: 232 nt

UniGene Fasta

>biog3_v1.0_unigene22588
AATGTTCCACTTCAAGGAAAAATCCATACAAACGACAGTTACAAGCGACGGTAGCGTTGTAGAGAATTGGGTTAATGTAAACAGGGCAGGAAATTGTAGGGTTTGATCTGGAATGGCGGCCCAATTTTCAAAAGGGATGGGAGAACGACACCGCCTTGCTCCAGCTTTGTACTGACAATGGCTGCCTGATTATTCAGATGTTGTTTCTGAATTTTATTCCGGAAGCCCTGGT

Ace file of the UniGene biog3_v1.0_unigene22588

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13765	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease	-	-	1.0e-17	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	werner syndrome-like exonuclease-like	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	62%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	62%
Blast2go	3'-5' exonuclease activity	GO:0008408	Molecular Function	62%
Blast2go	intracellular	GO:0005622	Cellular Component	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	3'-5' exonuclease domain	IPR002562	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1U4

Fln msg: Separated hits, possible frame ERROR between 76 and 81, Distance to subject end: 109 aas, your sequence is shorter than subject: 77 - 204

Fln protein: MFHFKEKSIQTTVTSDGSVVENWVxxxTGQEIVGFDLEWRPNFQKGWENDTALLQLCTDNGCLIIQMLFLNFIPEAL

Protein Length: 78

Fln nts: AATGTTCCACTTCAAGGAAAAATCCATACAAACGACAGTTACAAGCGACGGTAGCGTTGTAGAGAATTGGGTTAAxxxxxxAACAGGGCAGGAAATTGTAGGGTTTGATCTGGAATGGCGGCCCAATTTTCAAAAGGGATGGGAGAACGACACCGCCTTGCTCCAGCTTTGTACTGACAATGGCTGCCTGATTATTCAGATGTTGTTTCTGAATTTTATTCCGGAAGCCCTGGT

Fln Alignment:

biogeco3_mira_c21365___HFKEKSIQTTVTSDGSVVENWVNxxTGQEIVGFDLEWRPNFQKGWENDTALLQLCTDNGCLIIQMLFLNFIPEAL
A9P1U4__________________HFAEKSIQTTVTDDGHVVENWVNxxTGQEIVGFDMEWRPSFQRGWENDTALLQLCTDNGCLIIQMLFLDFIPEAL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain