SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22580

Length: 243 nt

UniGene Fasta

>biog3_v1.0_unigene22580
GCTGCAAGTGGCGAGCCTTCCATGGAAATTGGATGGTGTATACCATTCATTGTCCTCATATTGGCCAGAATCGTCAGCGCCAGATCGAATCTCATCCACGACTGCGATGAAACTTTTAACTACTGGGAGCCCCTTCATTATCTCCTCTACAAGTCAGGCTTCCAGACATGGGAATACAGCTTTGAATTCGCTCTTCGTTCATATTTGTACATTCTTTGCATGCATTGGCAGCTGCTCCAGCTT

Ace file of the UniGene biog3_v1.0_unigene22580

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1330	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SBK6_RICCO	-	-	57%
FL-Next	sp=Dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	77%
Blast2go	dol-p-man:man c -pp-dol alpha- -mannosyltransferase-like	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	GPI anchor biosynthetic process	GO:0006506	Biological Process	74%
Blast2go	sugar binding	GO:0005529	Molecular Function	74%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	74%
Blast2go	intrinsic to endoplasmic reticulum membrane	GO:0031227	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	GPI mannosyltransferase	IPR005599	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FZ49

Fln msg: Distance to subject end: 455 aas, your sequence is shorter than subject: 81 - 570

Fln protein: AASGEPSMEIGWCIPFIVLILARIVSARSNLIHDCDETFNYWEPLHYLLYKSGFQTWEYSFEFALRSYLYILCMHWQLLQL

Protein Length: 82

Fln nts: GCTGCAAGTGGCGAGCCTTCCATGGAAATTGGATGGTGTATACCATTCATTGTCCTCATATTGGCCAGAATCGTCAGCGCCAGATCGAATCTCATCCACGACTGCGATGAAACTTTTAACTACTGGGAGCCCCTTCATTATCTCCTCTACAAGTCAGGCTTCCAGACATGGGAATACAGCTTTGAATTCGCTCTTCGTTCATATTTGTACATTCTTTGCATGCATTGGCAGCTGCTCCAGCTT

Fln Alignment:

biogeco3_mira_c21357___WCIPFIVLILARIVSARSNLIHDCDETFNYWEPLHYLLYKSGFQTWEYSFEFALRSYLYIL
Q9FZ49__________________WFLPFIALCYLRYMSATSNIIHDCDEVFNYWEPLHYILYKSGFQTWEYSSNFALRSYLYIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain