SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22556

Length: 397 nt

UniGene Fasta

>biog3_v1.0_unigene22556
CCAGATCATGCACAATTCAAATCTCAAGCCGCGTGATAGTAATGATAGCAAGTGTAGATGTGTGCCTTCACGTATCTGAGGATGAACCAGCAAATGTTTCAGAGCGAGAATTGGCATCGCTTCGTGTGGTTTGTAAGGAACATGAGCGAGGGACGAACGCTGAGGCATGGAGAAGAGGATCGTTCTGACATTGAGCTCAAGTTCAATGCCGCTGCGTATCTGAGAAATGATGCCGCAGCTCTGATGCACGCTTAGCTTTATTCTTGATTCTGTCTACCAAAGTGTGTAATTAAGAGGGTGTATTATATGGTATCGGGATAAGTTGTGCTTATCAATAGGTTCGTGTGCAGTATGCTTAGAATAAAATGTCCAGAGCATAGTTTTATTAGTCGAGCGA

Ace file of the UniGene biog3_v1.0_unigene22556

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2691	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	beta-amylase PCT-BMYI [Solanum tuberosum]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	78%
Blast2go	Metabolic pathways	01100		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	78%
Blast2go	maltose biosynthetic process	GO:0000024	Biological Process	78%
Blast2go	starch catabolic process	GO:0005983	Biological Process	78%
Blast2go	cation binding	GO:0043169	Molecular Function	78%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD77

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 85 - 210

Fln protein: PDHAQFKSQAA*****QV*MCAFTYLRMNQQMFQSENWHRFVWFVRNMSEGRTLRHGEEDRSDIELKFNAAAYLRNDAAALMHA*

Protein Length: 86

Fln nts: CCAGATCATGCACAATTCAAATCTCAAGCCGCGTGATAGTAATGATAGCAAGTGTAGATGTGTGCCTTCACGTATCTGAGGATGAACCAGCAAATGTTTCAGAGCGAGAATTGGCATCGCTTCGTGTGGTTTGTAAGGAACATGAGCGAGGGACGAACGCTGAGGCATGGAGAAGAGGATCGTTCTGACATTGAGCTCAAGTTCAATGCCGCTGCGTATCTGAGAAATGATGCCGCAGCTCTGATGCACGCTTAG___CTTTATTCTTGATTCTGTCTACCAAAGTGTGTAATTAAGAGGGTGTATTATATGGTATCGGGATAAGTTGTGCTTATCAATAGGTTCGTGTGCAGTATGCTTAGAATAAAATGTCCAGAGCATAGTTTTATTAGTCGAGCGA

Fln Alignment:

biogeco3_mira_c21325___MCAFTYLRMNQQMFQSENWHRFVWFVRNMSEGR-TLRHGEEDRSDIE
D5AD77__________________MCAFTYLRMSQHLFHPENWRLFVSFVRKLAQGQATSNSWEQEHRDTD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain