SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22552

Length: 251 nt

UniGene Fasta

>biog3_v1.0_unigene22552
AATGTTTCACTTATCAGCTCCATTCTGATCTGACTAATAGGTTGCAGAGCCAGGAGGTCGCTGCCATTTACAGAGGGCGTAGTGTTAATATGGTAGAGATGAGAACCCTTATCCTGCGGATGCTGCAGATGGAGGTGCTACCAGAGGACATGAAAAGTATGGTAGAGCTGAACACTCTAGTTGTGCAATCCAACGTTTTAGTTAAGATCCCATCATGGATATGTGATTTCGAGCTAGTTAAGTTGTCTAAT

Ace file of the UniGene biog3_v1.0_unigene22552

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30647	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J5_PINTA	-	-	2.0e-07	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	nbs lrr	-	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABU5

Fln msg: Distance to subject end: 169 aas, your sequence is shorter than subject: 83 - 425

Fln protein: CFTYQLHSDLTNRLQSQEVAAIYRGRSVNMVEMRTLILRMLQMEVLPEDMKSMVELNTLVVQSNVLVKIPSWICDFELVKLSN

Protein Length: 84

Fln nts: AATGTTTCACTTATCAGCTCCATTCTGATCTGACTAATAGGTTGCAGAGCCAGGAGGTCGCTGCCATTTACAGAGGGCGTAGTGTTAATATGGTAGAGATGAGAACCCTTATCCTGCGGATGCTGCAGATGGAGGTGCTACCAGAGGACATGAAAAGTATGGTAGAGCTGAACACTCTAGTTGTGCAATCCAACGTTTTAGTTAAGATCCCATCATGGATATGTGATTTCGAGCTAGTTAAGTTGTCTAAT

Fln Alignment:

biogeco3_mira_c21317___NMVEMRTLILRMLQMEVLPEDMKSMVELNTLVVQSNVLVKIPSWICDFE
D5ABU5__________________NMVEMRTLILRMQQMEVLPEDMKSMVELGTLVVQSSVLVKIPSWICGFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain