SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22538

Length: 225 nt

UniGene Fasta

>biog3_v1.0_unigene22538
AATGTATACCGCACACGAAAAGAGAAGGAGAACGTGAGCTTCAATGTTCATGTTATTCAGTGGTTTGAAGTGCTGGACGGACTTTTGGGCCCGTTTTGGAAGGTCCTTGGCTTGGCTTTCAATTGTACATTTCTCCTTTGTGGATCTGTGATACAGCTCATAGGTTGTGCAAGCAATATATATTACATCAATGATCACCTGGACAAGAGAACGTGGACCTATATT

Ace file of the UniGene biog3_v1.0_unigene22538

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13560	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	auxin influx transport protein [Casuarina glauca] gb\|ABN81350.1\| auxin influx transport protein [Casuarina glauca]	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	auxin influx carrier component	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transport	GO:0006865	Biological Process	90%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	90%
Blast2go	symporter activity	GO:0015293	Molecular Function	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%
Blast2go	integral to membrane	GO:0016021	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-
Sma3	Tachykinin/Neurokinin-like, conserved site	IPR013055	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVE6

Fln msg: Distance to subject end: 321 aas, your sequence is shorter than subject: 75 - 496

Fln protein: NVYRTRKEKENVSFNVHVIQWFEVLDGLLGPFWKVLGLAFNCTFLLCGSVIQLIGCASNIYYINDHLDKRTWTYI

Protein Length: 76

Fln nts: AATGTATACCGCACACGAAAAGAGAAGGAGAACGTGAGCTTCAATGTTCATGTTATTCAGTGGTTTGAAGTGCTGGACGGACTTTTGGGCCCGTTTTGGAAGGTCCTTGGCTTGGCTTTCAATTGTACATTTCTCCTTTGTGGATCTGTGATACAGCTCATAGGTTGTGCAAGCAATATATATTACATCAATGATCACCTGGACAAGAGAACGTGGACCTATATT

Fln Alignment:

biogeco3_mira_c21298___YRTRKEKENVSFNVHVIQWFEVLDGLLGPFWKVLGLAFNCTFLLCGSVIQLIGCASNIYYINDHLDKRTWTYI
A9NVE6__________________YRTRKEKENVSFKNHVIQWFEVLDGLLGSFWKVLGLAFNCTFLLCGSVIQLIGCASNIYYINDHLDKRTWTYI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain