SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22534

Length: 199 nt

UniGene Fasta

>biog3_v1.0_unigene22534
AATGTCAATGGTTGGCTCTCATTCTCCTCGAGACTTGTGCCATGAATTGCGATAAGGTGTTCTCCGAGGTGGCTTCCGAGAGAGTTTTGGATGAGATGGTCAAAATGATTGACGATCCTCACACATTGCCGGTAATCGAAACAAGATTTTGCAATTAATTCAGGCATGGGGANAGTCTGGCGAAGATCTTCGTTATTTG

Ace file of the UniGene biog3_v1.0_unigene22534

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16925	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Target of Myb protein 1 [Arabidopsis thaliana] ref\|NP_850833.1\| Target of Myb protein 1 [Arabidopsis thaliana] emb\|CAC01701.1\| TOM (target of myb1)-like protein [Arabidopsis thaliana] gb\|AAL10477.1\| AT5g16880/F2K13_30 [Arabidopsis thaliana] gb\|AAL32718.1\|	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	target of myb protein 1	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	VHS	IPR002014	-	-
Sma3	GAT	IPR004152	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Target of Myb protein 1	IPR014645	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAB9

Fln msg: Overlapping hits, possible frame ERROR between 128 and 125, Distance to subject end: 238 aas, your sequence is shorter than subject: 66 - 398

Fln protein: CQWLALILLETCAMNCDKVFSEVASERVLDEMVKMIDDPHxxxGNRNKILQLIQAWGKSGEDLRYL

Protein Length: 67

Fln nts: AATGTCAATGGTTGGCTCTCATTCTCCTCGAGACTTGTGCCATGAATTGCGATAAGGTGTTCTCCGAGGTGGCTTCCGAGAGAGTTTTGGATGAGATGGTCAAAATGATTGACGATCCTCACxxxxxxxxxGGTAATCGAAACAAGATTTTGCAATTAATTCAGGCATGGGGAaAGTCTGGCGAAGATCTTCGTTATTTG

Fln Alignment:

biogeco3_mira_c21293___QWLALILLETCAMNCDKVFSEVASERVLDEMVKMIDDPHTxAGNRNKILQLIQAWGKSGEDLRYL
D5AAB9__________________QYWALILLETCAMNCDKVFSEVASDRVLDEMVKIIDDPHTxAGNRNKILQLIQAWGESAEDLRYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain