SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22514

Length: 283 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22514
TTCCAGGATTTGATCGGACAGAGTTTGAGGCTAAACAGGTTTTCATAGCCAGCAAGGATGGAACTCAGATTCCAATGTTCATTGTATCCAAGAAAGGCATTGTTCTTGATGGTTCTCATCCAGCACTATTATATGGTTATGGGGGCTTTAATATTAGCATCACGCCATACTTCAGTGTTGGTCACATTGTTATTTCAAGACATTTAGGGGCGGTCTTTGCTATCGCAAATATCGAGGTGGTACAATATGGAGAAGAATGGCATAAAGCAGGTTCTCTTGCAAG

Ace file of the UniGene biog3_v1.0_unigene22514 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7549	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-type endopeptidase n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD4_CUCME	-	-	72%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	73%
Blast2go	prolyl oligopeptidase-like protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	84%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GQ52

Fln msg: Distance to subject end: 195 aas, your sequence is shorter than subject: 93 - 731

Fln protein: PGFDRTEFEAKQVFIASKDGTQIPMFIVSKKGIVLDGSHPALLYGYGGFNISITPYFSVGHIVISRHLGAVFAIANIEVVQYGEEWHKAGSLA

Protein Length: 94

Fln nts: TTCCAGGATTTGATCGGACAGAGTTTGAGGCTAAACAGGTTTTCATAGCCAGCAAGGATGGAACTCAGATTCCAATGTTCATTGTATCCAAGAAAGGCATTGTTCTTGATGGTTCTCATCCAGCACTATTATATGGTTATGGGGGCTTTAATATTAGCATCACGCCATACTTCAGTGTTGGTCACATTGTTATTTCAAGACATTTAGGGGCGGTCTTTGCTATCGCAAATATCGAGGTGGTACAATATGGAGAAGAATGGCATAAAGCAGGTTCTCTTGCAAG

Fln Alignment:

biogeco3_mira_c21263___PGFDRTEFEAKQVFIASKDGTQIPMFIVSKKGIVLDGSHPALLYGYGGFNISITPYFSVGHIVISRHLGAVFAIANIE-VVQYGEEWHKAGSLA
B9GQ52__________________PGFDRTEFQVNQVFVPSKDGTKIPMFIVAKKNIKLDGSHPCLLYAYGGFNISLTPSFSISRTVLTRHLGAVFCIANIRGGGEYGEEWHKAGSLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain