SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22511

Length: 264 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22511
TGCCAATTCGATCTACGCCATATACAATTGCCAAGTCTTTCGGCCGAGCCAAGGGTTCTGTTTGGCAGAATGATATGTTTGAGGATAGCATGGAAGCCTTTGGCGTGCAGCTTGGATTTGAGACTGGTACAAAATTGTACGTCTCCAATTTGGATAATGGAGTGTCCAATGACGATATGAAGCAACTGTTTTCAGAGGTTGGCGAGCTTAAACGGTGTTCAATCCATTATGATAGAAGTGGTCGTTCCAAGGGTACAGCAGAAG

Ace file of the UniGene biog3_v1.0_unigene22511 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene62404	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	THO complex subunit 4 [Arabidopsis thaliana] emb\|CAB85990.1\| putative protein [Arabidopsis thaliana] gb\|AED90486.1\| THO complex subunit 4 [Arabidopsis thaliana]	-	-	8.99999e-40	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	rna and export factor binding	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Fibrillarin	IPR000692	-	-
Sma3	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	IPR007504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEG8

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 87 - 274

Fln protein: PIRSTPYTIAKSFGRAKGSVWQNDMFEDSMEAFGVQLGFETGTKLYVSNLDNGVSNDDMKQLFSEVGELKRCSIHYDRSGRSKGTAE

Protein Length: 88

Fln nts: TGCCAATTCGATCTACGCCATATACAATTGCCAAGTCTTTCGGCCGAGCCAAGGGTTCTGTTTGGCAGAATGATATGTTTGAGGATAGCATGGAAGCCTTTGGCGTGCAGCTTGGATTTGAGACTGGTACAAAATTGTACGTCTCCAATTTGGATAATGGAGTGTCCAATGACGATATGAAGCAACTGTTTTCAGAGGTTGGCGAGCTTAAACGGTGTTCAATCCATTATGATAGAAGTGGTCGTTCCAAGGGTACAGCAGAAG

Fln Alignment:

biogeco3_mira_c21260___RSTPYTIAKSFGRAKGSVWQNDMFEDSMEAFGVQLGFETGTKLYVSNLDNGVSNDDMKQLFSEVGELKRCSIHYDRSGRSKGTAE
D5AEG8__________________RPSPYSIAKSFNRAKGVVWQHDMFEDSMAAIGMPIGLETGTKLYVSNLDSGVSNQDIKELFTEVGDLKSCALHYDRSGRSNGTAE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain