SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22507

Length: 229 nt

UniGene Fasta

>biog3_v1.0_unigene22507
TCAATCTGGTTTTGTAGTCATGTAGCTCGATGTCAATGTGTTGCGATATTTATCCAAGGACGAGTTTCGTGTACTCACAGCCGTTGAAATGGGCATGAAAAATCATGAAATTGTCCCAGCAGAGCTTGTGGATCGAATTGCCGGTCTCAAGCATGGGGGCACTTACAAGAATTTGAGAGGAAGCGAGCTATTGCAGCAGCCCATGGTGCTAGGAGGTCCCATGCCTCAA

Ace file of the UniGene biog3_v1.0_unigene22507

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene725	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase rio2, putative n=1 Tax=Ricinus communis RepID=B9T518_RICCO	-	-	54%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	88%
Blast2go	rio kinase 2	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	RIO2 kinase, winged helix, N-terminal	IPR015285	-	-
Sma3	RIO-like kinase	IPR018934	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: A9S0S1

Fln msg: Distance to subject end: 213 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 68 - 283

Fln protein: LDVNVLRYLSKDEFRVLTAVEMGMKNHEIVPAELVDRIAGLKHGGTYKNLRGSELLQQPMVLGGPMPQ

Protein Length: 69

Fln nts: TCAATCTGGTTTTGTAGTCATGTAGCTCGATGTCAATGTGTTGCGATATTTATCCAAGGACGAGTTTCGTGTACTCACAGCCGTTGAAATGGGCATGAAAAATCATGAAATTGTCCCAGCAGAGCTTGTGGATCGAATTGCCGGTCTCAAGCATGGGGGCACTTACAAGAATTTGAGAGGAAGCGAGCTATTGCAGCAGCCCATGGTGCTAGGAGGTCCCATGCCTCAA

Fln Alignment:

biogeco3_mira_c21256___M*LDVNVLRYLSKDEFRVLTAVEMGMKNHEIVPAELVDRIAGLKHGGTYKNLR
A9S0S1__________________MKLDVNALRYLTKDEFRVLTAVEMGMKNHEIVPAELVDRIAGLKHGGAYKNMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain