SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22456

Length: 558 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22456
GAACCTGATCCTCTTGTGTGTGGAGCATTGCTAGGTGGGTGCAGAATTCATGGAAATATGGAATTAGGTAGACGTGTAGCAGATTGCCTTCTAGCATTGCAACCACAGAACCATGGAACGTATGTCGTCCTCATATCAAATATTTTTGCTTCCAGGGGCATGTGGGATGAAGCAAAAAGGGTAACAACAATGAAGATAGGAGCTTAAAAAAGCCACCAGGATGTAGCTGGAGTCAAGCCAAAAACCAGATACGTGTATTTGTTGTAAGAGATAAATGCTCCACAAAAATAGGAGATTTATGCAGAGTTGGACAAATTGGCTGGGCAGATGAAGGCAGAAGGACATGCAGTGAACGGTGAATATAAAGCAGGTATCAAATGGTCAATATTAAGCTGGTGCTACACGACGTGGAGGAGGAGCAAAAGCAGCAAATTCTCTGTCAGCATTGTGAGAAGCTGGCCATTGCTTTTAGACTCATCAGCACACTGCCTGGAACAACTCTGGGTCTTGAAAAATCTCCGTGTTTGTGTTGACTATCTCACATCACTGTCAAGTTCA

Ace file of the UniGene biog3_v1.0_unigene22456 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17463	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY	-	-	9.94922e-44	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	pentatricopeptide repeat-containing protein chloroplastic-like	-	-	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAH8

Fln msg: Distance to subject end: 30 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 186 - 210

Fln protein: EPDPLVCGALLGGCRIHGNMELGRRVADCLLALQPQNHGTYVVLISNIFASRGMWDEAKRVTTMKIGA*KSHQDVAGVKPKTRYVYLL*EINAPQK*EIYAELDKLAGQMKAEGHAVNGEYKAGIKWSILSWCYTTWRRSKSSKFSVSIVRSWPLLLDSSAHCLEQLWVLKNLRVCVDYLTSLSSS

Protein Length: 187

Fln nts: GAACCTGATCCTCTTGTGTGTGGAGCATTGCTAGGTGGGTGCAGAATTCATGGAAATATGGAATTAGGTAGACGTGTAGCAGATTGCCTTCTAGCATTGCAACCACAGAACCATGGAACGTATGTCGTCCTCATATCAAATATTTTTGCTTCCAGGGGCATGTGGGATGAAGCAAAAAGGGTAACAACAATGAAGATAGGAGCTTAAAAAAGCCACCAGGATGTAGCTGGAGTCAAGCCAAAAACCAGATACGTGTATTTGTTGTAAGAGATAAATGCTCCACAAAAATAGGAGATTTATGCAGAGTTGGACAAATTGGCTGGGCAGATGAAGGCAGAAGGACATGCAGTGAACGGTGAATATAAAGCAGGTATCAAATGGTCAATATTAAGCTGGTGCTACACGACGTGGAGGAGGAGCAAAAGCAGCAAATTCTCTGTCAGCATTGTGAGAAGCTGGCCATTGCTTTTAGACTCATCAGCACACTGCCTGGAACAACTCTGGGTCTTGAAAAATCTCCGTGTTTGTGTTGACTATCTCACATCACTGTCAAGTTCA

Fln Alignment:

biogeco3_mira_c21168___EPDPLVCGALLGGCRIHGNMELGRRVADCLLALQPQNHGTYVVLISNIFASRGMWDEAKRV-TTMKIGA*KSHQDVAGVKPKTR-YVYLL*EINAPQK*EIYAELDKLAGQMKAEGHAVNGEYKAGIKWSILSWCYTTWRRSKSSKFSVSIVRSWPLLLDSSAHCLEQLWVLKNLRVCVDYLTS
D5AAH8__________________EPTADVWGALLASCRIHGNMWLGKLAAERLFKLRPDRAGTYVAL-SNIYSAAGRWDEAAKLRRLMNDRGVKKEPGYSWVQVKNMVHTFSVGDISHPQIEDIYAMLDKLAGQMKTAGHVPNTNF---------ALHDVDDEQKERTLYHHSEKLAIAFALISTPHG-TSIQINKNLRVCVDCHTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain