SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22435

Length: 355 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22435
ATCACAGCCTTCAACAAGTGATGCACCTCGTGGTATTACAAGGGATGCCATTGGAGAAACAGAGACAGATTCTGAGTGAGTGTAGATGAGATTTTCACAAGTAATTCCATATATGTTGTCACAAAGACACTAATTTTGTTCATCTGTATAGTAGGGCAACAAATTTAGGGATTAGTTCTATTGAAGTCGTTTTGATTGGTGTCAAATGATAAGATGAACTCATCCAGCAAAGACTGGTATCATTAGAATTTCATCAATTCGTAAGTAGGTACTCTTTACCTTTAATCGTCCATGATTGATGGAAGGCCATGAAATTGCAGATTCATTTGTATGGTGGTTTAACTCTTGTTACATT

Ace file of the UniGene biog3_v1.0_unigene22435 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16124	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HVA22-like protein k [Arabidopsis thaliana] sp\|Q6NLY8.1\|HA22K_ARATH RecName: Full=HVA22-like protein k; Short=AtHVA22k gb\|AAS76284.1\| At4g36720 [Arabidopsis thaliana] gb\|AEE86693.1\| HVA22-like protein k [Arabidopsis thaliana]	-	-	5.99756e-43	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	hva22-like protein k-like	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	TB2/DP1/HVA22-related protein	IPR004345	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0N9

Fln msg: your sequence is shorter than subject: 26 - 194

Fln protein: SQPSTSDAPRGITRDAIGETETDSE*

Protein Length: 27

Fln nts: ATCACAGCCTTCAACAAGTGATGCACCTCGTGGTATTACAAGGGATGCCATTGGAGAAACAGAGACAGATTCTGAGTGA___GTGTAGATGAGATTTTCACAAGTAATTCCATATATGTTGTCACAAAGACACTAATTTTGTTCATCTGTATAGTAGGGCAACAAATTTAGGGATTAGTTCTATTGAAGTCGTTTTGATTGGTGTCAAATGATAAGATGAACTCATCCAGCAAAGACTGGTATCATTAGAATTTCATCAATTCGTAAGTAGGTACTCTTTACCTTTAATCGTCCATGATTGATGGAAGGCCATGAAATTGCAGATTCATTTGTATGGTGGTTTAACTCTTGTTACATT

Fln Alignment:

biogeco3_mira_c21132___SQPSTSDAPRGITRDAIGETETDSE
A9P0N9__________________SQPSTSDAPRCITRDAIEETETDSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain