SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22430

Length: 229 nt

UniGene Fasta

>biog3_v1.0_unigene22430
AATGTAGAGCCATCGTTGCATGATGATTGGGTTAGTGTAGTTGATGGTTCTTATCCCAACTTCATATTTAGTGGGTCGTTTGATAGCATTGGAAGGATATGGAAGGGATGTGGCTTATGCACACATGTTTTGGAGGGACACAGGGATGCTATCACTTCTGCTGCTTTCATCATGCCATCCGATTCTGGTGATAAGTTTTATAAATCTAGCTACTGCCTCGAAGGATCGA

Ace file of the UniGene biog3_v1.0_unigene22430

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5297	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb\|CAC01754.1\| putative protein [Arabidopsis thaliana] gb\|AAL36367.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14196.1\| unknown protein [Arabidopsis thaliana] gb\|AED92176.1\| transducin/	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	68%
Blast2go	ribosome biogenesis protein wdr12 homolog	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	72%
Blast2go	nucleolus	GO:0005730	Cellular Component	72%
Blast2go	heterotrimeric G-protein complex	GO:0005834	Cellular Component	72%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	NLE	IPR012972	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C297

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 76 - 427

Fln protein: NVEPSLHDDWVSVVDGSYPNFIFSGSFDSIGRIWKGCGLCTHVLEGHRDAITSAAFIMPSDSGDKFYKSSYCLEGS

Protein Length: 77

Fln nts: AATGTAGAGCCATCGTTGCATGATGATTGGGTTAGTGTAGTTGATGGTTCTTATCCCAACTTCATATTTAGTGGGTCGTTTGATAGCATTGGAAGGATATGGAAGGGATGTGGCTTATGCACACATGTTTTGGAGGGACACAGGGATGCTATCACTTCTGCTGCTTTCATCATGCCATCCGATTCTGGTGATAAGTTTTATAAATCTAGCTACTGCCTCGAAGGATCGA

Fln Alignment:

biogeco3_mira_c21127___EPSLHDDWVSVVDGSYPNFIFSGSFDSIGRIWKGCGLCTHVLEGHRDAITSAAFIMP
A5C297__________________EPSLHDDWVSAVDGSNPGFILTGCYDGLGRLWKAAGSCTHILEGHNDAITSVKFIDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain