SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22423

Length: 264 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22423
TGTGGAGGATTATGTTCGGAATTGCGAGAACTTTTGTTGGACTATCTGAAGGCATTGCTAAGTATGGATTCCTTGCTCTTGCTACTGCAATCGTCGCCTTTGCGGGTCTTTTTGTACGGGCAAGATATACAGTCAATCCTGACAAAGTTTACAGGATTGCAATGCGAAATTGAACACATCAGCTGGAATTTTGGAGGTTATGGGAGCTCCTCTTTCTGGAACAGATGTGCGGGCATATATTATGTCTGGAGGCAGGATTCGGCT

Ace file of the UniGene biog3_v1.0_unigene22423 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3512	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIM21 domain containing protein	-	-	2.0e-07	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	uncharacterized protein	-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%
Blast2go	plastid	GO:0009536	Cellular Component	92%
Blast2go	vacuole	GO:0005773	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial inner membrane translocase complex, subunit Tim21	IPR013261	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPW2

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 167 and 167, Distance to subject end: 126 aas, your sequence is shorter than subject: 87 - 382

Fln protein: WRIMFGIARTFVGLSEGIAKYGFLALATAIVAFAGLFVRARYTVNPDKVYRIAMxxLNTSAGILEVMGAPLSGTDVRAYIMSGGRIR

Protein Length: 88

Fln nts: TGTGGAGGATTATGTTCGGAATTGCGAGAACTTTTGTTGGACTATCTGAAGGCATTGCTAAGTATGGATTCCTTGCTCTTGCTACTGCAATCGTCGCCTTTGCGGGTCTTTTTGTACGGGCAAGATATACAGTCAATCCTGACAAAGTTTACAGGATTGCAATGxxxxxxTTGAACACATCAGCTGGAATTTTGGAGGTTATGGGAGCTCCTCTTTCTGGAACAGATGTGCGGGCATATATTATGTCTGGAGGCAGGATTCGGCT

Fln Alignment:

biogeco3_mira_c21114___WRIMFGIARTFVGLSEGIAKYGFLALATAIVAFAGLFVRARYTVNPDKVYRIAMRKLNTSAGILEVMGAPLSGTDVRAYIMSGGRIR
C0PPW2__________________WKLMFGIASTFVGLSEGIAKYGFLALATAIVAFAGLYVRARYTVNPDKVYRIAMRKLNTSAGILEVMGAPLSGTDVRAYIMSGGRIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain