SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22402

Length: 243 nt

UniGene Fasta

>biog3_v1.0_unigene22402
AATGTAATACTGTGACATCATTTCTTTTTAAAGAAGTTGCAAATATAAATCATCTTCCTACTCAGGACTTTGTCGTCAGGAATGACATGGGGTGTGGCTCTACAATTGGTCCTATATTGGCAGCAGGAGTTGGTATTCGCACTGTGGATTGTGGCATTCCCCAACTTTCCATGCATAGCGTGCGGGAGATGTGTGGCGTAGAAGACGTCAACATTGCATACAAGCATTTTAAGGCATTCTATC

Ace file of the UniGene biog3_v1.0_unigene22402

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3592	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl aminopeptidase [Arabidopsis thaliana] emb\|CAB86013.1\| aspartyl aminopeptidase-like protein [Arabidopsis thaliana] dbj\|BAB08975.1\| aspartyl aminopeptidase [Arabidopsis thaliana] gb\|AED90774.1\| aspartyl aminopeptidase [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	aspartyl aminopeptidase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aminopeptidases.	EC:3.4.11.-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	82%
Blast2go	aminopeptidase activity	GO:0004177	Molecular Function	82%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	82%
Blast2go	metallopeptidase activity	GO:0008237	Molecular Function	82%
Blast2go	vacuole	GO:0005773	Cellular Component	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Peptidase M18	IPR001948	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN23

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 80 - 502

Fln protein: CNTVTSFLFKEVANINHLPTQDFVVRNDMGCGSTIGPILAAGVGIRTVDCGIPQLSMHSVREMCGVEDVNIAYKHFKAFY

Protein Length: 81

Fln nts: AATGTAATACTGTGACATCATTTCTTTTTAAAGAAGTTGCAAATATAAATCATCTTCCTACTCAGGACTTTGTCGTCAGGAATGACATGGGGTGTGGCTCTACAATTGGTCCTATATTGGCAGCAGGAGTTGGTATTCGCACTGTGGATTGTGGCATTCCCCAACTTTCCATGCATAGCGTGCGGGAGATGTGTGGCGTAGAAGACGTCAACATTGCATACAAGCATTTTAAGGCATTCTATC

Fln Alignment:

biogeco3_mira_c21079___NTVTSFLFKEVANINHLPTQDFVVRNDMGCGSTIGPILAAGVGIRTVDCGIPQLSMHSVREMCGVEDVNIAYKHFKAFY
B8LN23__________________NAVTSFIFREIGKKNKLPTQEFVVRNDMPCGSTVGPILASGVGIRTVDVGAPQLSMHSIREMCGVDDVVYSHLHFKAFF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain