SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22350

Length: 213 nt

UniGene Fasta

>biog3_v1.0_unigene22350
AATGTCCAACGCTCCTTTCAGGGGAATCATCAACGATATCAGAGGAAGGCTGCCATGCTACAAGCAGGACTGGATCGGCGGATTCACTGCAGGATTCAGGATATTGGCTCCAACCGCTTACATTTTCTTCGCTTCTGCTCTTCCTGTGATAGCGTTTGGGGAACAACTTGGCAGAGATACAGATGGGACTTTGAGCGCTGTCCAAACACTAGC

Ace file of the UniGene biog3_v1.0_unigene22350

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1084	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Boron transporter n=1 Tax=Citrus macrophylla RepID=A5JUZ5_9ROSI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	anion exchanger family protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	borate transport	GO:0046713	Biological Process	87%
Blast2go	response to boron-containing substance	GO:0010036	Biological Process	87%
Blast2go	inorganic anion exchanger activity	GO:0005452	Molecular Function	87%
Blast2go	borate transmembrane transporter activity	GO:0046715	Molecular Function	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bicarbonate transporter, eukaryotic	IPR003020	-	0.0	-
Sma3	Bicarbonate transporter, C-terminal	IPR011531	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRN9

Fln msg: Distance to subject end: 595 aas, atg_distance in limit (1-15): atg_distance = 6, your sequence is shorter than subject: 70 - 671

Fln protein: MSNAPFRGIINDIRGRLPCYKQDWIGGFTAGFRILAPTAYIFFASALPVIAFGEQLGRDTDGTLSAVQTL

Protein Length: 71

Fln nts: A_-_ATGTCCAACGCTCCTTTCAGGGGAATCATCAACGATATCAGAGGAAGGCTGCCATGCTACAAGCAGGACTGGATCGGCGGATTCACTGCAGGATTCAGGATATTGGCTCCAACCGCTTACATTTTCTTCGCTTCTGCTCTTCCTGTGATAGCGTTTGGGGAACAACTTGGCAGAGATACAGATGGGACTTTGAGCGCTGTCCAAACACTAGC

Fln Alignment:

biogeco3_mira_c20999___MSNAPFRGIINDIRGRLPCYKQDWIGGFTAGFRILAPTAYIFFASALPVIAFGEQLGRDTDGTLSAVQTL
B8LRN9__________________VSNAPFRGIINDIRGRLPCYKQDWIGGFTAGFRILAPTAYIFFASALPVIAFGEQLGRDTDGTLSAVQTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain