SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22346

Length: 495 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22346
AGATAACTCGTGAAATGGTCATTGATGCAACCTACAAAGCTAACAAATCACGATTTATCAATCATAGCTGCCGACCCAACACTGAGCTTCAAAAATGGAAAAATGATGGCGAGACCAGAGTGGGGTTTTTGCGAAGAAGAATATAAGGAAAGGAGAATTCATAACATATGATTACCAGTGGATCCAATTTGGCACCGATCAACAGTGCTATTGTGGTGCACCAGATTGTAGACGTATTCTAGGAGCTAAACCCAGCAAGCAAAAGAAGTCTTCAGATGCAGCTATGAAAATTGTGACTCAGGAGGTTATTCTTCCAAGGTCCTTGAAGAATCCACTTCTATACGCCAATCACAATGAAAAAGATAAGTCACATAAAGTTTTTGGTAAAGAGATTTTATTGCTCAAAAAGAAGAGACCAAGGTCAGATTGTATCAATATCCGTGTTCGTGTATGGTGTCCTCTTGATCAAAGGTTCTACTTTGGAAAGATTACATT

Ace file of the UniGene biog3_v1.0_unigene22346 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4138	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	SET domain protein n=1 Tax=Populus trichocarpa RepID=B9N8L1_POPTR	-	-	67%
FL-Next	sp=Histone-lysine N-methyltransferase ASHH3; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	histone-lysine n-methyltransferase ashh3-like	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lysine degradation	00310		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	histone lysine methylation	GO:0034968	Biological Process	75%
Blast2go	peptidyl-lysine methylation	GO:0018022	Biological Process	75%
Blast2go	binding	GO:0005488	Molecular Function	75%
Blast2go	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	AWS	IPR006560	-	-
Sma3	Zinc finger, RING-like	IPR014857	-	-
Sma3		IPR018069	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q945S8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 25 aas, your sequence is shorter than subject: 48 - 363

Fln protein: ITREMVIDATYKANKSRFINHSCRPNTELQKWKNDGETRVGFLRRRI*

Protein Length: 49

Fln nts: AGATAACTCGTGAAATGGTCATTGATGCAACCTACAAAGCTAACAAATCACGATTTATCAATCATAGCTGCCGACCCAACACTGAGCTTCAAAAATGGAAAAATGATGGCGAGACCAGAGTGGGGTTTTTGCGAAGAAGAATATAAGGAAAGGAGAATTCATAACATATGATTACCAGTGGATCCAATTTGGCACCGATCAACAGTGCTATTGTGGTGCACCAGATTGTAGACGTATTCTAGGAGCTAAACCCAGCAAGCAAAAGAAGTCTTCAGATGCAGCTATGAAAATTGTGACTCAGGAGGTTATTCTTCCAAGGTCCTTGAAGAATCCACTTCTATACGCCAATCACAATGAAAAAGATAAGTCACATAAAGTTTTTGGTAAAGAGATTTTATTGCTCAAAAAGAAGAGACCAAGGTCAGATTGTATCAATATCCGTGTTCGTGTATGGTGTCCTCTTGATCAAAGGTTCTACTTTGGAAAGATTACATT

Fln Alignment:

biogeco3_mira_c20995___ITREMVIDATYKANKSRFINHSCRPNTELQKWKNDGETRVGFLRRR
Q945S8__________________ITRDMVIDATHKGNKSRYINHSCNPNTQMQKWIIDGETRIGIFATR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain