SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22345

Length: 246 nt

UniGene Fasta

>biog3_v1.0_unigene22345
AATGTATGCGAGAAAATGTCAAGGTCTACAACCTCGGAGGGATGGGCTGCAGCGCAACTCTGATCGCCATAGACATGGCCAAGGATTTGCTCAGAGTTCATGGGAATTCATTTGCGGTAATTGTAAGCTCTGACAGCATTTCGCAGAGCTGGTATGCCGGGACCGAGAGATCCATGATGGTCACAAATTGCCTGTTCAGGGCCGGGGGCGCGGCAATTTTATTGACCAACAAGCCCGGATAACATT

Ace file of the UniGene biog3_v1.0_unigene22345

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59366	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=2 Tax=Vitis vinifera RepID=A5AJT6_VITVI	-	-	47%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	beta-ketoacyl- synthase family protein	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	69%
Blast2go	response to light stimulus	GO:0009416	Biological Process	69%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD26

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 203 aas, your sequence is shorter than subject: 80 - 486

Fln protein: CMRENVKVYNLGGMGCSATLIAIDMAKDLLRVHGNSFAVIVSSDSISQSWYAGTERSMMVTNCLFRAGGAAILLTNKPG*

Protein Length: 81

Fln nts: AATGTATGCGAGAAAATGTCAAGGTCTACAACCTCGGAGGGATGGGCTGCAGCGCAACTCTGATCGCCATAGACATGGCCAAGGATTTGCTCAGAGTTCATGGGAATTCATTTGCGGTAATTGTAAGCTCTGACAGCATTTCGCAGAGCTGGTATGCCGGGACCGAGAGATCCATGATGGTCACAAATTGCCTGTTCAGGGCCGGGGGCGCGGCAATTTTATTGACCAACAAGCCCGGATAACATT

Fln Alignment:

biogeco3_mira_c20994___MRENVKVYNLGGMGCSATLIAIDMAKDLLRVHGNSFAVIVSSDSISQSWYAGTERSMMVTNCLFRAGGAAILLTNK
D5AD26__________________MRGNILSFNLGGMGCSAGIIAVDLARDLLQVHSNTYAIVLSTENITLNWYTGNDRSMLLPNCLFRMGGSAILLSNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain