SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22342

Length: 321 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22342
AATGTTTCTGATAGCAAGAAGGAGGCTCCTAAAGAAGGAGCTCCACATATAGCTGCTCAAACTTTTACTTTTCGTGAGCTTGCTGCAGCTACGAAGAACTTCAGACCTGAATGCCTTTAGGTGAAGGTGGCTTTGGCCGAGTGTACAAGGGGCGTCTAGAGAGTACAGGGCAGGTTGTTGCAGTTAAGCAGCTAGACAGAAATGGACTCCAAGGAAACAGGGAATTTCTTGTGGAAGTGCTCATGCTTAGTCTTCTACAACATCCTAATTTAGTAACTTGATAGGTTATTGCGCCGATGGTGATCAACGACTTCTTGTCTA

Ace file of the UniGene biog3_v1.0_unigene22342 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2338	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor serine-threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RT11_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein kinase family protein	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 117 and 117, and overlapping frame ERROR between 275 and 275, Distance to subject end: 290 aas, your sequence is shorter than subject: 107 - 458

Fln protein: NVSDSKKEAPKEGAPHIAAQTFTFRELAAATKNFRPECxxGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLQHPNxxxLIGYCADGDQRLLV

Protein Length: 108

Fln nts: AATGTTTCTGATAGCAAGAAGGAGGCTCCTAAAGAAGGAGCTCCACATATAGCTGCTCAAACTTTTACTTTTCGTGAGCTTGCTGCAGCTACGAAGAACTTCAGACCTGAATGCxxxxxxGGTGAAGGTGGCTTTGGCCGAGTGTACAAGGGGCGTCTAGAGAGTACAGGGCAGGTTGTTGCAGTTAAGCAGCTAGACAGAAATGGACTCCAAGGAAACAGGGAATTTCTTGTGGAAGTGCTCATGCTTAGTCTTCTACAACATCCTAATTTxxxxxxCTTGATAGGTTATTGCGCCGATGGTGATCAACGACTTCTTGTCTA

Fln Alignment:

biogeco3_mira_c20989___DSKKEAPKEGAPHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLQHPNLVNLIGYCADGDQRLLV
D5AAA3__________________DSRKEVSRDGSQHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYRGRLESTGQAVAVKQLDRNGVQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain