SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22323

Length: 272 nt

UniGene Fasta

>biog3_v1.0_unigene22323
AATGTAATACTCTGTTGGATGCACTTTGTAAAGGAGGGCAGCTGGACCTCGCTTCTTATATCATGTCTGGAATGCCTCAAAACAATATTTGGCCCAATGTTGTTACTTACAGTACTGTAATTGACGGGTATGCTAAAGCCGGACGCCTCGATGTGGCACTGGGCTTATACCAGGAGATGAAGTCGGCTAGGATTGATCTCGACAGAGTTTCTATAACACTCTGTTATCCATTTATGCCAAGCTTGGTAGTTTGAAGATGCTCTTAGAGTTTG

Ace file of the UniGene biog3_v1.0_unigene22323

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1864	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	genomes uncoupled 1 protein [Arabidopsis thaliana] sp\|Q9SIC9.1\|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gb\|AAD26479.1\| unknown protein [Arabidopsis thaliana] gb\|AEC08542.1\| genomes un	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	pentatricopeptide repeat-containing protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	mitochondria-nucleus signaling pathway	GO:0031930	Biological Process	71%
Blast2go	chloroplast-nucleus signaling pathway	GO:0010019	Biological Process	71%
Blast2go	DNA binding	GO:0003677	Molecular Function	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN20

Fln msg: your sequence is shorter than subject: 84 - 420

Fln protein: CNTLLDALCKGGQLDLASYIMSGMPQNNIWPNVVTYSTVIDGYAKAGRLDVALGLYQEMKSARIDLDRVSITLCYPFMPSLVV*

Protein Length: 85

Fln nts: AATGTAATACTCTGTTGGATGCACTTTGTAAAGGAGGGCAGCTGGACCTCGCTTCTTATATCATGTCTGGAATGCCTCAAAACAATATTTGGCCCAATGTTGTTACTTACAGTACTGTAATTGACGGGTATGCTAAAGCCGGACGCCTCGATGTGGCACTGGGCTTATACCAGGAGATGAAGTCGGCTAGGATTGATCTCGACAGAGTTTCTATAACACTCTGTTATCCATTTATGCCAAGCTTGGTAGTTTGA___AGATGCTCTTAGAGTTTG

Fln Alignment:

biogeco3_mira_c20957___NTLLDALCKGGQLDLASYIMSGMPQNNIWPNVVTYSTVIDGYAKAGRLDVALGLYQEMKSARIDLDRVSIT
B8LN20__________________NSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain