SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22253

Length: 358 nt

UniGene Fasta

>biog3_v1.0_unigene22253
AATGTTACTAAATATTTGGGCAAAGGAAAGTCTGGGCGGAATTCAATGCAAGCCGTGAGTTCTGTAATGGAGAATCCGAGTGTTAGAGTTAGAAAAGCGGGAAGATGGTCTGATTGTTGTTGCCAGAGATGTGCTTCGTGGAGTTCGTCAGACAAAGGGAAACTGTACGTTTTCTCGGCGGGACAAGGTTCCAGTACTTGTGCTTCTAGTGGCAGTTTGATTGATTCAGAATCAAATGTCATATTTATCCATGGGTTTCTTTCTTCCTCATCTTTGTGGATTGAGACAATCTTACCCTCTTTATCCGAAGCTACAAAACTAGGCATACAGGCTCTTTGCAGTTGATCTTCTTGGATTT

Ace file of the UniGene biog3_v1.0_unigene22253

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36760	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gb\|AAM61155.1\| unknown [Arabidopsis thaliana] dbj\|BAC43707.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63446.1\| At1g64670 [Arabidopsis thaliana] emb\|CAH03662.1\| synthetase/hydrolase	-	-	2.0e-38	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein	-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant extracellular matrix	GO:0048196	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Ribosomal protein S7	IPR000235	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLA4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 244 aas, your sequence is shorter than subject: 115 - 476

Fln protein: NVTKYLGKGKSGRNSMQAVSSVMENPSVRVRKAGRWSDCCCQRCASWSSSDKGKLYVFSAGQGSSTCASSGSLIDSESNVIFIHGFLSSSSLWIETILPSLSEATKLGIQALCS*

Protein Length: 116

Fln nts: AATGTTACTAAATATTTGGGCAAAGGAAAGTCTGGGCGGAATTCAATGCAAGCCGTGAGTTCTGTAATGGAGAATCCGAGTGTTAGAGTTAGAAAAGCGGGAAGATGGTCTGATTGTTGTTGCCAGAGATGTGCTTCGTGGAGTTCGTCAGACAAAGGGAAACTGTACGTTTTCTCGGCGGGACAAGGTTCCAGTACTTGTGCTTCTAGTGGCAGTTTGATTGATTCAGAATCAAATGTCATATTTATCCATGGGTTTCTTTCTTCCTCATCTTTGTGGATTGAGACAATCTTACCCTCTTTATCCGAAGCTACAAAACTAGGCATACAGGCTCTTTGCAGTTGATCTTCTTGGATTT

Fln Alignment:

biogeco3_mira_c20857___TKYLGKGKSGRNSMQAVSSVMENPSVRVRKAGRWSDCCCQRCASWSSSDKGKLYVFSAGQGSSTCASSGSLIDSESNVIFIHGFLSSSSLWIETILPSLSEATKL
B8LLA4__________________TKYLGRGKYGRESMQTVSSVTEIPSVRVRKAGRWSDCCCQRCASWNSSDKGKLYVFLGGQGSSTCASSGSLIDSESNVILIHGFLSSSSLWIETIYPSLSESTKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain