SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22205

Length: 271 nt

UniGene Fasta

>biog3_v1.0_unigene22205
GATGCATTGATGATATGTACCTCTGTGCTACTGCTTTGTCTGGCTACTGACATTTTCTTATGCTTATCTGCCTTGTAGCACGCTCAAACAGCAGGGTCAATCTTCAGAAAAAATAAACCGGGGAATGATTTTGGCACCCCTCGTAGGAATGATTTTGAACCTCGCAGACAAAACTGTATCATCATGTCATGGTGTACAGAACGATTTGATGCAAGCATTCATGAATATGGATTGCTCACCAGAAGTTGAATCCAATTTACAGTATTACATT

Ace file of the UniGene biog3_v1.0_unigene22205

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene722	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] sp\|Q9SIZ8.2\|RKP_ARATH RecName: Full=E3 ubiquitin-protein ligase RKP; Short=AtKPC1; AltName: Full=Protein RELATED TO KPC1 gb\|AEC07251.1\| ubiquitination-promoting complex protein 1 [Arabidops	-	-	54%
FL-Next	sp=E3 ubiquitin-protein ligase RKP; Arabidopsis thaliana (Mouse-ear cress).	-	-	45%
Blast2go	protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	70%
Blast2go	response to virus	GO:0009615	Biological Process	70%
Blast2go	proteolysis involved in cellular protein catabolic process	GO:0051603	Biological Process	70%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SIZ8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 119 aas, your sequence is shorter than subject: 90 - 1280

Fln protein: MH**YVPLCYCFVWLLTFSYAYLPCSTLKQQGQSSEKINRGMILAPLVGMILNLADKTVSSCHGVQNDLMQAFMNMDCSPEVESNLQYYI

Protein Length: 91

Fln nts: GATGCATTGATGATATGTACCTCTGTGCTACTGCTTTGTCTGGCTACTGACATTTTCTTATGCTTATCTGCCTTGTAGCACGCTCAAACAGCAGGGTCAATCTTCAGAAAAAATAAACCGGGGAATGATTTTGGCACCCCTCGTAGGAATGATTTTGAACCTCGCAGACAAAACTGTATCATCATGTCATGGTGTACAGAACGATTTGATGCAAGCATTCATGAATATGGATTGCTCACCAGAAGTTGAATCCAATTTACAGTATTACATT

Fln Alignment:

biogeco3_mira_c20795___TLKQQGQSSEKINRGMILAPLVGMILNLADKTVSSCHGVQNDLMQAFMNMDCSPEVESNLQYYI
Q9SIZ8__________________SLRRQGQPSEKVSRGILLAPLVGIILNLLEASEDSKPKQQHDVIGLFASMDCPDTVYYGFQYLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain