SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22194

Length: 298 nt

UniGene Fasta

>biog3_v1.0_unigene22194
CCGACCAGAAGAGAGAGCTCGCTGCCTTCTTCGCTAATGTGATGCACGAAACTGGAGGACTGTGCTACATCAACGAGATAAATCCTTCGTCAAACTACTGTCAGAGTTCCAGCACGTGGCCGTGTGCGAGCGGGAAGAGCTACCATGGGCGTGGCCCCATCCAACTAAGCTGGAATTACAATTATGGAGCGGCGGGGCAGGACATTGGCTTCGACGGGCTGAACAACCCAGAGAAAGTGGGGCAAGACGCCACCATTTCGTTCAAGACGGCTGTGTGGTTCTGGATGAAGAACACATT

Ace file of the UniGene biog3_v1.0_unigene22194

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16647	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Class IV chitinase Chia4-Pa1.3 n=8 Tax=Picea RepID=Q6WSS1_PICAB	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	class iv chitinase chia4-	-	-	91%

Source	InterPros	Term	Type	Identity
Sma3	Chitin-binding, type 1, conserved site	IPR018371	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NP56

Fln msg: Distance to subject end: 55 aas, your sequence is shorter than subject: 98 - 284

Fln protein: DQKRELAAFFANVMHETGGLCYINEINPSSNYCQSSSTWPCASGKSYHGRGPIQLSWNYNYGAAGQDIGFDGLNNPEKVGQDATISFKTAVWFWMKNT

Protein Length: 99

Fln nts: CCGACCAGAAGAGAGAGCTCGCTGCCTTCTTCGCTAATGTGATGCACGAAACTGGAGGACTGTGCTACATCAACGAGATAAATCCTTCGTCAAACTACTGTCAGAGTTCCAGCACGTGGCCGTGTGCGAGCGGGAAGAGCTACCATGGGCGTGGCCCCATCCAACTAAGCTGGAATTACAATTATGGAGCGGCGGGGCAGGACATTGGCTTCGACGGGCTGAACAACCCAGAGAAAGTGGGGCAAGACGCCACCATTTCGTTCAAGACGGCTGTGTGGTTCTGGATGAAGAACACATT

Fln Alignment:

biogeco3_mira_c20778___QKRELAAFFANVMHETGGLCYINEINPSSNYCQSSSTWPCASGKSYHGRGPIQLSWNYNYGAAGQDIGFDGLNNPEKVGQDATISFKTAVWFWMKNT
A9NP56__________________QKRELAAFFANVMHETGGLCYINEISPSSNYCQSSSTWPCTSGKSYHGRGPLQLSWNYNYGAAGQSIGFDGLNNPEKVGQDATISFKTAVWFWMKNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain