SustainPineDB

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Assembly info
Unigenes
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22166

Length: 368 nt

UniGene Fasta

>biog3_v1.0_unigene22166
GGGACTAACCAGCAGCGGATTACGAAGAAAAGTCATCTTGCAAGGATAGACATACAAAAGTTGATGGTAGGGGACGGCGAATTCGAATGCCAGCGGCCTGTGCAGCTAGAATATTTCAGCTGACTAAAGAACTCGGGCATAAATCCGATGGGGATGTCATACAGTGGTTGTTGCAACAGGCGGAGCCATCGATCATAGCGGCCACAGGCACAGGTACGAGACCAGCTTCGGCTGCAGCCATGGCAGGGTCTATTGGAGAGTTGGGCATAAATGTACTGACCGACTCACCCCATGGGTCGCTGGGACTCACAGTGCGGGGCTGTGGTCATGGCGATATTATAATGGAAAGAAGGTCATTGTTGCAGGGA

Ace file of the UniGene biog3_v1.0_unigene22166

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58446	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor TCP8 [Arabidopsis thaliana] sp\|Q9C518.1\|TCP8_ARATH RecName: Full=Transcription factor TCP8 gb\|AAG50694.1\|AC079604_1 auxin-induced basic helix-loop-helix transcription factor, putative [Arabidopsis thaliana] gb\|AAG50759.1\|AC079131_4 au	-	-	8.0e-28	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	protein	-	-	1.09954e-36	84%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Transcription factor, TCP	IPR005333	-	-
Sma3	Transcription factor TCP subgroup	IPR017887	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR43

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 322 aas, your sequence is shorter than subject: 122 - 517

Fln protein: D*PAADYEEKSSCKDRHTKVDGRGRRIRMPAACAARIFQLTKELGHKSDGDVIQWLLQQAEPSIIAATGTGTRPASAAAMAGSIGELGINVLTDSPHGSLGLTVRGCGHGDIIMERRSLLQG

Protein Length: 123

Fln nts: GGGACTAACCAGCAGCGGATTACGAAGAAAAGTCATCTTGCAAGGATAGACATACAAAAGTTGATGGTAGGGGACGGCGAATTCGAATGCCAGCGGCCTGTGCAGCTAGAATATTTCAGCTGACTAAAGAACTCGGGCATAAATCCGATGGGGATGTCATACAGTGGTTGTTGCAACAGGCGGAGCCATCGATCATAGCGGCCACAGGCACAGGTACGAGACCAGCTTCGGCTGCAGCCATGGCAGGGTCTATTGGAGAGTTGGGCATAAATGTACTGACCGACTCACCCCATGGGTCGCTGGGACTCACAGTGCGGGGCTGTGGTCATGGCGATATTATAATGGAAAGAAGGTCATTGTTGCAGGGA

Fln Alignment:

biogeco3_mira_c20738___PAADYEEKSSCKDRHTKVDGRGRRIRMPAACAARIFQLTKELGHKSDGDVIQWLLQQAEPSIIAATGTGTRPASAAAMAGSI
C0PR43__________________PAA---KRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFSTLNVSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain