SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22063

Length: 249 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22063
ATGCAAATGAATCATCTGCTACAACGGTAGCTTCTTATGATATCAACAACATTCTCATAGCTGCAACTGTTGAACGCCTACTTCATCCAACAAAGGACCGAATTGTTGTTGAGCTACAACAGGAAGCTCAGATTCATAACTTGAGGCCTAAATTTCATATGAGCAAGGAGAGGTTTGATTCTGAGATATATACTAGGAATCGGGATGCAGACTACATGTTTTCACCTTCGTATATTGAAGGAAAACATT

Ace file of the UniGene biog3_v1.0_unigene22063 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4787	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cation channel family protein [Tetrahymena thermophila] gb\|EAR83473.1\| cation channel family protein [Tetrahymena thermophila SB210]	-	-	2.0e-19	27%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	51%
Blast2go	protein	-	-	0.0	54%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	54%
Blast2go	catalytic activity	GO:0003824	Molecular Function	54%
Blast2go	ion channel activity	GO:0005216	Molecular Function	54%
Blast2go	membrane	GO:0016020	Cellular Component	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Potassium channel, calcium-activated, BK, alpha subunit	IPR003929	-	0.0	-
Sma3	Ion transport 2	IPR013099	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RGT7

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 82 - 712

Fln protein: ANESSATTVASYDINNILIAATVERLLHPTKDRIVVELQQEAQIHNLRPKFHMSKERFDSEIYTRNRDADYMFSPSYIEGKH

Protein Length: 83

Fln nts: ATGCAAATGAATCATCTGCTACAACGGTAGCTTCTTATGATATCAACAACATTCTCATAGCTGCAACTGTTGAACGCCTACTTCATCCAACAAAGGACCGAATTGTTGTTGAGCTACAACAGGAAGCTCAGATTCATAACTTGAGGCCTAAATTTCATATGAGCAAGGAGAGGTTTGATTCTGAGATATATACTAGGAATCGGGATGCAGACTACATGTTTTCACCTTCGTATATTGAAGGAAAACATT

Fln Alignment:

biogeco3_mira_c20584___NESSATTVASYDINNILIAATVERLL-HPT-KDRIVVELQQEAQIHNLRPKFHMSKERFDSEIYTRNRDADYMFSPSYIEGK
A9RGT7__________________DRSAPSQTFTLDVNNVFIAATVERLLRHETAKDRVIVELQQETEIQYLQPRLLFDRRIFDSEMYLRNRSATFQFAPPYIGGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain