SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22051

Length: 373 nt

UniGene Fasta

>biog3_v1.0_unigene22051
AATGTATACTAAACCTCACAAGCAATCTCTTTTATGGCACCATTCCAACTCAAATCTGGAGTCTTAAAAATCTCAAGCGCCTCGATCTGAGTTTAAATCAGTTGTCTGGAGCAATCTCTCCTAATATTAAAGAGTTAAGAGACCTGGAAGAACTAGTATTGGGCAGTAATGCATTATCTGGCAATTTAATTCAAGAGTTAGGTTCCCTGACTTGCTTACAAGTGCTAGACGTGAGCGTTAATTCTTTCAGTGGAAAAATTCCTATGGAGCTAGGCAATCTTGGTGACTTGGAGTACCTGGATGTCGGAGGTAATAGTCTGTCAGGCACCATACCAGCACATTTGGGTAACCTGTCAAAGTTATCAGTGCTTGA

Ace file of the UniGene biog3_v1.0_unigene22051

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene40058	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hcr2-0B n=1 Tax=Solanum lycopersicum RepID=Q9ZTJ9_SOLLC	-	-	4.0e-22	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at4g08850-like	-	-	7.63318e-27	64%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	8-oxoguanine DNA glycosylase, N-terminal	IPR012904	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 98 aas, your sequence is shorter than subject: 123 - 946

Fln protein: CILNLTSNLFYGTIPTQIWSLKNLKRLDLSLNQLSGAISPNIKELRDLEELVLGSNALSGNLIQELGSLTCLQVLDVSVNSFSGKIPMELGNLGDLEYLDVGGNSLSGTIPAHLGNLSKLSVL

Protein Length: 124

Fln nts: AATGTATACTAAACCTCACAAGCAATCTCTTTTATGGCACCATTCCAACTCAAATCTGGAGTCTTAAAAATCTCAAGCGCCTCGATCTGAGTTTAAATCAGTTGTCTGGAGCAATCTCTCCTAATATTAAAGAGTTAAGAGACCTGGAAGAACTAGTATTGGGCAGTAATGCATTATCTGGCAATTTAATTCAAGAGTTAGGTTCCCTGACTTGCTTACAAGTGCTAGACGTGAGCGTTAATTCTTTCAGTGGAAAAATTCCTATGGAGCTAGGCAATCTTGGTGACTTGGAGTACCTGGATGTCGGAGGTAATAGTCTGTCAGGCACCATACCAGCACATTTGGGTAACCTGTCAAAGTTATCAGTGCTTGA

Fln Alignment:

biogeco3_mira_c20562___ILNLTSNLFYGTIPTQIWSLKNLKRLDLSLNQLSGAISPNIKELRDLEELVLGSNALSGNLIQELGSLTCLQVLDVSVNSFSGKIP
C0PTA1__________________IFYLSNNNLTGEIPASIGCLRSLRLLNLSGNQLEGVIPASLGNISTLEELDLSKNHLKGEIPEGLSKLHELAVLDVSSNHLCGPIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain