SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22045

Length: 229 nt

UniGene Fasta

>biog3_v1.0_unigene22045
AATGTTATATATATCGACTTGGGCACTGCCCGCTAAACCTTGGCGGTGAAGTTCGCGGTTTTGCATGTTTGAGGGCACCATGGCTTCAGCAGGATCAAACCCACCTAAAGATGACGTGAGTCTGGTGGTGGCGTTGTTAGATACAAACCCATTCTTTTGGGCTTCTGCGGCTTCGAGTGGACAAGCGTCATCTCTCACCTTCCCCCAATTTTTAGAACATGTGCTTGCG

Ace file of the UniGene biog3_v1.0_unigene22045

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13814	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana] gb\|AAM61618.1\| unknown [Arabidopsis thaliana] gb\|ABE77412.1\| At1g18340 [Arabidopsis thaliana] gb\|AEE29705.1\| transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	DNA repair	GO:0006281	Biological Process	71%
Blast2go	general RNA polymerase II transcription factor activity	GO:0016251	Molecular Function	71%
Blast2go	core TFIIH complex	GO:0000439	Cellular Component	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Transcription factor Tfb4	IPR004600	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE19

Fln msg: Distance to subject end: 251 aas, your sequence is shorter than subject: 55 - 306

Fln protein: MFEGTMASAGSNPPKDDVSLVVALLDTNPFFWASAASSGQASSLTFPQFLEHVLA

Protein Length: 56

Fln nts: AATGTTATATATATCGACTTGGGCACTGCCCGCTAAACCTTGGCGGTGAAGTTCGCGGTTTTGC_-_ATGTTTGAGGGCACCATGGCTTCAGCAGGATCAAACCCACCTAAAGATGACGTGAGTCTGGTGGTGGCGTTGTTAGATACAAACCCATTCTTTTGGGCTTCTGCGGCTTCGAGTGGACAAGCGTCATCTCTCACCTTCCCCCAATTTTTAGAACATGTGCTTGCG

Fln Alignment:

biogeco3_mira_c20555___MFEGTMASAGSNPPKDDVSLVVALLDTNPFFWXXXXXXXXXXXLTFPQFLEHVLA
D5AE19__________________MFEGSMASAGSNPPQDDVSLVVVLLDTNPFFWASATSSGQASSLTFSQFLEHVLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain