SustainPineDB

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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22004

Length: 342 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22004
AGTCCCTCGTCGGTCCCCTGATGATGTTCGTCTACTCAAGCGTCGTGGCATCATTCATACTGAGAGGTTAAGTGACGAATACATAGCCAATATGTGGAGCGGCATGTGTCAGCCCTTCTTTACAGGGGAGCTGGGATACCAGGACATCAGTGAGCCACTCTTTGAAGTCCTCCGAAAAAACTATTTCAGGACCAAAATCAAAAGAATGCTTTTCGGACTTATTGACTATGTGTCAAGCTGGAAGTTCATAGCTCCTGCGGCAGGGTTCCTTGGTCTTGCCTTGACTGCTATACAGGCCTACCCAGTATTATTCGAGTGAGGGTGGAAACCAACTTAGACATT

Ace file of the UniGene biog3_v1.0_unigene22004 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58693	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF247 domain containing protein	-	-	4.0e-06	27%
FL-Next	sp=Putative UPF0481 protein At3g02645; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	30%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P0C897

Fln msg: your sequence is shorter than subject: 106 - 529

Fln protein: VPRRSPDDVRLLKRRGIIHTERLSDEYIANMWSGMCQPFFTGELGYQDISEPLFEVLRKNYFRTKIKRMLFGLIDYVSSWKFIAPAAGFLGLALTAIQAYPVLFE*

Protein Length: 107

Fln nts: AGTCCCTCGTCGGTCCCCTGATGATGTTCGTCTACTCAAGCGTCGTGGCATCATTCATACTGAGAGGTTAAGTGACGAATACATAGCCAATATGTGGAGCGGCATGTGTCAGCCCTTCTTTACAGGGGAGCTGGGATACCAGGACATCAGTGAGCCACTCTTTGAAGTCCTCCGAAAAAACTATTTCAGGACCAAAATCAAAAGAATGCTTTTCGGACTTATTGACTATGTGTCAAGCTGGAAGTTCATAGCTCCTGCGGCAGGGTTCCTTGGTCTTGCCTTGACTGCTATACAGGCCTACCCAGTATTATTCGAGTGA___GGGTGGAAACCAACTTAGACATT

Fln Alignment:

biogeco3_mira_c20496___SPDDVRLLKRRGIIHTERLSDEYIANMWSGMCQPFFTGELGYQDISEPLFEVLRKNYFRTKIKRMLFGLIDYVSSWKFIAPAAGFLGLALTAIQAYPVLF
P0C897__________________SEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLTKVGFLD--KTIEDVNRYYTGRWKVKIGRLVEVYVYGSWQILAFLAAVLLLMLVSLQLFSLVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain