SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21988

Length: 155 nt

UniGene Fasta

>biog3_v1.0_unigene21988
AATGTCTGAGGCCGAGGCCCTCGAGGTAATGACCTATATTTGCGTCTGTTTTGCAAGGGTGTGAGTTGAGGTCCCTCAATCTTTCTGATAATGCACTGGGTGAGAAGGGTGTAAGGGCATTTGGGCCTCTGTTGAAATCTCAGAAAACGTTGGAG

Ace file of the UniGene biog3_v1.0_unigene21988

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2334	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine rich repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RTY6_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	leucine rich repeat-containing	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW46

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 307 aas, your sequence is shorter than subject: 51 - 553

Fln protein: CLRPRPSR**PIFASVLQGCELRSLNLSDNALGEKGVRAFGPLLKSQKTLE

Protein Length: 52

Fln nts: AATGTCTGAGGCCGAGGCCCTCGAGGTAATGACCTATATTTGCGTCTGTTTTGCAAGGGTGTGAGTTGAGGTCCCTCAATCTTTCTGATAATGCACTGGGTGAGAAGGGTGTAAGGGCATTTGGGCCTCTGTTGAAATCTCAGAAAACGTTGGAG

Fln Alignment:

biogeco3_mira_c20473___IFASVLQGCELRSLNLSDNALGEKGVRAFGPLLKSQKTLE
A9NW46__________________IFSSVLQGCELRSLNLSDNALGEKGVRAFGSLLKSQKTLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain