SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21978

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene21978
AATGTATTTGTAAATTAGGAAAAAATGGTGTCTACTTTAATCTTGTCAAAAATGTCAGAGAGGCTTTTGAAGAATGTGATCTGGTGCGGATAAATTGCCGAGGAATGAAACCTAGTGATTACAAAAGGATAGGTGCCAAACTTAAGGAACTGGTTCCTTGTGTGTTGCTTTCGTTTGATAAAGACATTATTAATGTGGAGAGGTAGAGAATACACACCTAATAATTCTGAAGAGCGAGC

Ace file of the UniGene biog3_v1.0_unigene21978

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene39635	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRS2-associated factor 1 [Arabidopsis thaliana] sp\|Q9SL79.2\|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb\|AAK76556.1\| unkn	-	-	4.0e-25	74%
FL-Next	sp=CRS2-associated factor 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Blast2go	crs2-associated factor 1	-	-	1.06168e-31	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	Group II intron splicing	GO:0000373	Biological Process	1.06168e-31	87%
Blast2go	intracellular part	GO:0044424	Cellular Component	1.06168e-31	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA-binding, CRM domain	IPR001890	-	0.0	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SL79

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 245 aas, your sequence is shorter than subject: 68 - 701

Fln protein: CICKLGKNGVYFNLVKNVREAFEECDLVRINCRGMKPSDYKRIGAKLKELVPCVLLSFDKDIINVER*

Protein Length: 69

Fln nts: AATGTATTTGTAAATTAGGAAAAAATGGTGTCTACTTTAATCTTGTCAAAAATGTCAGAGAGGCTTTTGAAGAATGTGATCTGGTGCGGATAAATTGCCGAGGAATGAAACCTAGTGATTACAAAAGGATAGGTGCCAAACTTAAGGAACTGGTTCCTTGTGTGTTGCTTTCGTTTGATAAAGACATTATTAATGTGGAGAGGTAGAGAATACACACCTAATAATTCTGAAGAGCGAGC

Fln Alignment:

biogeco3_mira_c20452___ICKLGKNGVYFNLVKNVREAFEECDLVRINCRGMKPSDYKRIGAKLKELVPCVLLSFDKDIINVER*R
Q9SL79__________________ICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain