SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21972

Length: 306 nt

UniGene Fasta

>biog3_v1.0_unigene21972
TTGGAAAAATGCCTGAAAAGGGCCTTTACAGATATGCTGGACAGTGGAAGCACAGCCGGATGCATGGATGTGGAGTTTATGAAGTCAATCGCCGCCTAATGTGGGGTAAATTCTACTTTGGGGAGCTGTTGTCCAATCCTCGTGAATGCACTGCCGAGATATCAGCTATGCATGCAGGTTTAGCTGAGGTTGCAGGAGCAAAAGCAAGAATGTTTGTTAACAAGCCTGATGGAATGGTCAGGGAACTGAAAGGTCCATACAATGACCCTCAACATCCATACATGTATGAGGAAGAAGATTTACATT

Ace file of the UniGene biog3_v1.0_unigene21972

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2751	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	77%
Blast2go	morn (membrane occupation and recognition nexus) repeat-containing protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	85%
Blast2go	chloroplast organization	GO:0009658	Biological Process	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-
Sma3	MORN motif	IPR003409	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TKY9

Fln msg: Distance to subject end: 422 aas, your sequence is shorter than subject: 101 - 860

Fln protein: GKMPEKGLYRYAGQWKHSRMHGCGVYEVNRRLMWGKFYFGELLSNPRECTAEISAMHAGLAEVAGAKARMFVNKPDGMVRELKGPYNDPQHPYMYEEEDLH

Protein Length: 102

Fln nts: TTGGAAAAATGCCTGAAAAGGGCCTTTACAGATATGCTGGACAGTGGAAGCACAGCCGGATGCATGGATGTGGAGTTTATGAAGTCAATCGCCGCCTAATGTGGGGTAAATTCTACTTTGGGGAGCTGTTGTCCAATCCTCGTGAATGCACTGCCGAGATATCAGCTATGCATGCAGGTTTAGCTGAGGTTGCAGGAGCAAAAGCAAGAATGTTTGTTAACAAGCCTGATGGAATGGTCAGGGAACTGAAAGGTCCATACAATGACCCTCAACATCCATACATGTATGAGGAAGAAGATTTACATT

Fln Alignment:

biogeco3_mira_c20444___GKMPEKGLYRYAGQWKHSRMHGCGVYEVNRRLMWGKFYFGELLSNPRECTAEISAMHAGLAEVAGAKARMFVNKPDGMVRELKGPYNDPQHPYMYEEEDL
A9TKY9__________________GEKPEKGHYKYAGQWKHSRMHGCGVYELNGRQTWGKFYFGEMLPDEEECDDKLSAMHASLAEVAAAKARMFVNKPDGMVREMKGPFSDPQHPYMYEEEDM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain