SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21950

Length: 291 nt

UniGene Fasta

>biog3_v1.0_unigene21950
GTACGAGGAACATTGCCATGGATGGCACCAGAGCTTCTTAGTGGGAAAAGCGGCATGGTAACTGATAAAATTGATGTTTATTCATTTGGAATAGTCATGTGGGAACTCCTTACTGGGGATGAGCCTTTTGCAGACATGCATTGTGGGTCAATTATAGGTGGCATTATGAATAATACATTACGTCCATCAGTCCCAAGCTGGTGTGACCCTGCTTGGAGACTTTGATGGAAAGATGCTGGTCGGCTGATCCAGAAGAAAGGCCGCCATTTTCAGAAATTTCAAAGGAGTTAA

Ace file of the UniGene biog3_v1.0_unigene21950

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6262	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct]	-	-	1.00053e-42	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	protein	-	-	0.0	90%

Source	ECs	Term	Type	Identity
Blast2go	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	90%
Blast2go		EC:2.7.112.1	-	90%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	90%
Blast2go	non-membrane spanning protein tyrosine kinase activity	GO:0004715	Molecular Function	90%
Blast2go	protein serine/threonine/tyrosine kinase activity	GO:0004712	Molecular Function	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	90%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Vacuolar protein sorting-associated protein	IPR009543	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7U0

Fln msg: Overlapping hits, possible frame ERROR between 219 and 207, STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 97 - 157

Fln protein: VRGTLPWMAPELLSGKSGMVTDKIDVYSFGIVMWELLTGDEPFADMHCGSIIGGIMNNTLRPSVPSWCxxxxxxLMERCWSADPEERPPFSEISKEL

Protein Length: 98

Fln nts: GTACGAGGAACATTGCCATGGATGGCACCAGAGCTTCTTAGTGGGAAAAGCGGCATGGTAACTGATAAAATTGATGTTTATTCATTTGGAATAGTCATGTGGGAACTCCTTACTGGGGATGAGCCTTTTGCAGACATGCATTGTGGGTCAATTATAGGTGGCATTATGAATAATACATTACGTCCATCAGTCCCAAGCTGGTGTxxxxxxxxxxxxxxxxxxTTGATGGAAAGATGCTGGTCGGCTGATCCAGAAGAAAGGCCGCCATTTTCAGAAATTTCAAAGGAGTTAA

Fln Alignment:

biogeco3_mira_c20415___VRGTLPWMAPELLSGKSGMVTDKIDVYSFGIVMWELLTGDEPFADMHCGSIIGGIMNNTLRPSVPSWCDxxxxTLMERCWSADPEERPPFSEISKEL
D5A7U0__________________VRGTLPWMAPELLSGKSGMVTDKVDVYSFGIVMWELLTGDEPYADMHCGSIIGGIMNNTLRPPVPSWSDxxxxSLMERCWSADPEQRPPFSEISKEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain