SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21884

Length: 286 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21884
AATGTCAATTCTGGAAGTTTTGTGGATGCTCGCAATATATTTGACAAAATATCAGGCCAGAGTGTTTTTGCTTGGAATGCCATGATCAGAGGTTATGCCATCCACGGAAACTGCGAAGAAGCCCTTAAATTCTATCGTCAAATGGAGACAGGGGGCATGTTACCTGATAAATTCACTTTCCCTTTTGTGCTCAAGGCATGTGTTGCCTTACAGTCTCTCATGCATGGTTTCGAGATCCATCGCTGCATAGTTAAGAGTGGATTGGAGTCGGATTTGTTTGTACATT

Ace file of the UniGene biog3_v1.0_unigene21884 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58501	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01535, PPR, PPR repeat	-	-	2.0e-06	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	pentatricopeptide repeat-containing	-	-	6.2257e-23	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 95 - 644

Fln protein: NVNSGSFVDARNIFDKISGQSVFAWNAMIRGYAIHGNCEEALKFYRQMETGGMLPDKFTFPFVLKACVALQSLMHGFEIHRCIVKSGLESDLFVH

Protein Length: 96

Fln nts: AATGTCAATTCTGGAAGTTTTGTGGATGCTCGCAATATATTTGACAAAATATCAGGCCAGAGTGTTTTTGCTTGGAATGCCATGATCAGAGGTTATGCCATCCACGGAAACTGCGAAGAAGCCCTTAAATTCTATCGTCAAATGGAGACAGGGGGCATGTTACCTGATAAATTCACTTTCCCTTTTGTGCTCAAGGCATGTGTTGCCTTACAGTCTCTCATGCATGGTTTCGAGATCCATCGCTGCATAGTTAAGAGTGGATTGGAGTCGGATTTGTTTGTACATT

Fln Alignment:

biogeco3_mira_c20320___VNSGSFVDARNIFDKISGQSVFAWNAMIRGYAIHGNCEEALKFYRQMETGGMLPDKFTFPFVLKACVALQSLMHGFEIHRCIVKSGLESDLFV
B8LLJ0__________________VKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVL---GEFHDEIVKGGFESNVFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain