SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21843

Length: 518 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21843
AGTTCTTGGCTTCTGGTCANCTTTGATGATTGCATTGGGTAACACTGAGAACATGCCTGTTCGCATTACACCTCGTATACTTGAGGATATTTGCATGCGCCAGAGTGCATTAATTGCTGCAGCCATTTCAAATATCCGAAAAGATCTCCTTAGCCAACCACTTCAATTGCTTTATGGTGTTGATATTCTTGGAAATGCAAGCAGTGCGCTTGGACACATGAGCAAAGGTGTTGCTGCATTGTCGATGGATAAGAAGTTTATACAAAGTCGCCAAAAACAGGAAAGAAAAGGCAACATAGAAGACAACAGTGATGTTATTCGGGAAGGTGGAGGGGCTTTTGCAAAAGGACTCTTTCGCGGAGTTACAGGTATTGTAACAAAGCCACTTGAAGGTGCCAGATCATCTGGTGTGGAGGGTTTTGTTCAAGGTGTTGGCAAAGGTATAATTGGAGTAGCAGCTCAACCAATGAGTGGAGTTTCTTGATCTTCTGTCGAAAACTACAGAAGGTGCAAACATT

Ace file of the UniGene biog3_v1.0_unigene21843 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11153	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar protein sorting 13C protein-like [Oryza sativa Japonica Group] dbj\|BAD19586.1\| vacuolar protein sorting 13C protein-like [Oryza sativa Japonica Group]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	calcium-dependent lipid-binding-like partial	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	protein localization	GO:0008104	Biological Process	75%
Blast2go	signal transduction	GO:0007165	Biological Process	75%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Vacuolar protein sorting-associated protein 62	IPR009291	-	-
Sma3	Vacuolar protein sorting-associated protein	IPR009543	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: Q8LGH2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 236 aas, atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 153 - 418

Fln protein: MIALGNTENMPVRITPRILEDICMRQSALIAAAISNIRKDLLSQPLQLLYGVDILGNASSALGHMSKGVAALSMDKKFIQSRQKQERKGNIEDNSDVIREGGGAFAKGLFRGVTGIVTKPLEGARSSGVEGFVQGVGKGIIGVAAQPMSGVS*

Protein Length: 154

Fln nts: AGTTCTTGGCTTCTGGTCAtCTTTG_-_ATGATTGCATTGGGTAACACTGAGAACATGCCTGTTCGCATTACACCTCGTATACTTGAGGATATTTGCATGCGCCAGAGTGCATTAATTGCTGCAGCCATTTCAAATATCCGAAAAGATCTCCTTAGCCAACCACTTCAATTGCTTTATGGTGTTGATATTCTTGGAAATGCAAGCAGTGCGCTTGGACACATGAGCAAAGGTGTTGCTGCATTGTCGATGGATAAGAAGTTTATACAAAGTCGCCAAAAACAGGAAAGAAAAGGCAACATAGAAGACAACAGTGATGTTATTCGGGAAGGTGGAGGGGCTTTTGCAAAAGGACTCTTTCGCGGAGTTACAGGTATTGTAACAAAGCCACTTGAAGGTGCCAGATCATCTGGTGTGGAGGGTTTTGTTCAAGGTGTTGGCAAAGGTATAATTGGAGTAGCAGCTCAACCAATGAGTGGAGTTTCTTGATCTTCTGTCGAAAACTACAGAAGGTGCAAACATT

Fln Alignment:

biogeco3_mira_c20265___VLGFWSSLMIALGNTENMPVRITPRILEDICMRQSALIAAAISNIRKDLLSQPLQLLYGVDILGNASSALGHMSKGVAALSMDKKFIQSRQKQERKGNIEDNSDVIREGGGAFAKGLFRGVTGIVTKPLEGARSSGVEGFVQGVGKGIIGVAAQPMSGV
Q8LGH2__________________VLGFWSSLMTALGNTENMPVRISERFHENISMRQSTMINNAIRNVKKDLLGQPLQLLSGVDILGNASSALGHMSQGIAALSMDKKFIQSRQRQENKG-VEDFGDIIREGGGALAKGLFRGVTGILTKPLEGAKSSGVEGFVSGFGKGIIGAAAQPVSGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain