SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21841

Length: 281 nt

UniGene Fasta

>biog3_v1.0_unigene21841
AATGTATTATATTATTGCACAGCAATAACAGAAAGGAAAAAATCATGGCGATGGCGATTGCGATGAGCAGATCCAATCTGGGAAGGGGCATAAGACTGATGTCCACTTCTGGATGGTGGAAAACTGTAGAGCCAGCTCCCAAAGACCCCATTCTCGGAGTCACCGAAGCCTTTTTAGCAGATACAGATCCTAGCAAGGTCAATGTTGGCGTGGGTGCGTATCGCGATGATCAAGGGAAGCCAGTGGTTCTTCAATGTGTGCGCGAGGCTGAGAGGCGTATT

Ace file of the UniGene biog3_v1.0_unigene21841

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16326	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartate aminotransferase n=1 Tax=Picea sitchensis RepID=A9NUJ0_PICSI	-	-	95%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	aspartate aminotransferase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	91%
Blast2go	Cysteine and methionine metabolism	00270	91%
Blast2go	Arginine and proline metabolism	00330	91%
Blast2go	Tyrosine metabolism	00350	91%
Blast2go	Phenylalanine metabolism	00360	91%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	91%
Blast2go	Carbon fixation in photosynthetic organisms	00710	91%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	91%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	91%
Blast2go	Biosynthesis of phenylpropanoids	01061	91%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	91%
Blast2go	Biosynthesis of plant hormones	01070	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	copper ion binding	GO:0005507	Molecular Function	91%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Aspartate/other aminotransferase	IPR000796	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUJ0

Fln msg: Distance to subject end: 352 aas, your sequence is shorter than subject: 79 - 431

Fln protein: MAMAIAMSRSNLGRGIRLMSTSGWWKTVEPAPKDPILGVTEAFLADTDPSKVNVGVGAYRDDQGKPVVLQCVREAERRI

Protein Length: 80

Fln nts: AATGTATTATATTATTGCACAGCAATAACAGAAAGGAAAAAATC_-_ATGGCGATGGCGATTGCGATGAGCAGATCCAATCTGGGAAGGGGCATAAGACTGATGTCCACTTCTGGATGGTGGAAAACTGTAGAGCCAGCTCCCAAAGACCCCATTCTCGGAGTCACCGAAGCCTTTTTAGCAGATACAGATCCTAGCAAGGTCAATGTTGGCGTGGGTGCGTATCGCGATGATCAAGGGAAGCCAGTGGTTCTTCAATGTGTGCGCGAGGCTGAGAGGCGTATT

Fln Alignment:

biogeco3_mira_c20263___MAMAIAMSRSNLGRGIRLMSTSGWWKTVEPAPKDPILGVTEAFLADTDPSKVNVGVGAYRDDQGKPVVLQCVREAERRI
A9NUJ0__________________MAMAMAMSRSNAGRGIRLMSTSGWWKAVEPAPKDPILGVTEAFLADTDPNKVNVGVGAYRDDQGKPVVLQSVREAERRI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain