SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21831

Length: 380 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21831
GGCTAGACCGAGAAATTCAGAGATCACTTAGACAAATAATCGCAAATCGCAAAAACGATGCGACGGTGGGGAAAGTTGAGAACCCCTACGGCAAAGATCTTCTTGGCTTGATGATGGCAGCAAACAATGATGAAGTGAAGAAGCATTTGAGTATGTCTTTTCAAGATATGATTGATGAATGCAAGACTTTCTTCGTGGCTGGGCATGAAACAACATCCATTTTATTGGCTTGGACTGTCATTCTCCTTGCCATGCACACTGACTGGCAGGAACAAGCCAGAAACGAAGTGCTACATTATGTAACAATGCACCTCCCAATGCCGAGGTTCTAAGTCGCCTGAAAATAGTCAATATGGTTCTTCACGAGGTCTTAAGGCTTT

Ace file of the UniGene biog3_v1.0_unigene21831 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5123	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 enzyme n=1 Tax=Pisum sativum RepID=A4PBE8_PEA	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	cytochrome p450	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	66%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	66%
Blast2go	Methane metabolism	00680	66%
Blast2go	Phenylpropanoid biosynthesis	00940	66%
Blast2go	Biosynthesis of phenylpropanoids	01061	66%
Blast2go	Metabolic pathways	01100	66%
Blast2go	Biosynthesis of secondary metabolites	01110	66%

Source	GOs	Term	Type	Identity
Blast2go	brassinosteroid homeostasis	GO:0010268	Biological Process	66%
Blast2go	brassinosteroid metabolic process	GO:0016131	Biological Process	66%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	66%
Blast2go	response to light stimulus	GO:0009416	Biological Process	66%
Blast2go	iron ion binding	GO:0005506	Molecular Function	66%
Blast2go	protein binding	GO:0005515	Molecular Function	66%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	66%
Blast2go	steroid hydroxylase activity	GO:0008395	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	O-acyltransferase, WSD1, C-terminal	IPR009721	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 131 aas, your sequence is shorter than subject: 110 - 517

Fln protein: LDREIQRSLRQIIANRKNDATVGKVENPYGKDLLGLMMAANNDEVKKHLSMSFQDMIDECKTFFVAGHETTSILLAWTVILLAMHTDWQEQARNEVLHYVTMHLPMPRF*

Protein Length: 111

Fln nts: GGCTAGACCGAGAAATTCAGAGATCACTTAGACAAATAATCGCAAATCGCAAAAACGATGCGACGGTGGGGAAAGTTGAGAACCCCTACGGCAAAGATCTTCTTGGCTTGATGATGGCAGCAAACAATGATGAAGTGAAGAAGCATTTGAGTATGTCTTTTCAAGATATGATTGATGAATGCAAGACTTTCTTCGTGGCTGGGCATGAAACAACATCCATTTTATTGGCTTGGACTGTCATTCTCCTTGCCATGCACACTGACTGGCAGGAACAAGCCAGAAACGAAGTGCTACATTATGTAACAATGCACCTCCCAATGCCGAGGTTCTAAGTCGCCTGAAAATAGTCAATATGGTTCTTCACGAGGTCTTAAGGCTTT

Fln Alignment:

biogeco3_mira_c20252___LDREIQRSLRQIIANRKNDATVGKVENPYGKDLLGLMMAANNDEVKKHLS---MSFQDMIDECKTFFVAGHETTSILLAWTVILLAMHTDWQEQARNEVL
A9NWW9__________________LEKEIRKCMRQVIEARERTADIEQ-SGSYGTDLLGLMMSAKNKRVGGKLQDVRMTTEEIIDECKTFYFAGHETTSILLTWTIILLGMHQDWQDRGRKEVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain