SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21809

Length: 267 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21809
TTGTGCAGATGATGATAAGAAGGCAGAAGTTGACATTGATGATGCTGTAGGAGCTGAAGAAGATCTTCCTGAGAAGCGGACAGAGCCTCGGGTTGCCTCAAGATTACCCTTGGTGTTTGCAGAAAAGGTTCATCGTTCAAAGGCACTTCTTGAATGCGAAGGGGAGGCTTTGGATTTAAGTGGAGATGTTGGTGCTGTGGGTCGTTTAGTTGTGTCTAAAACACCAACAGACGATTGTGAGATTTTATTGGACATCAAAGGGACATT

Ace file of the UniGene biog3_v1.0_unigene21809 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18731	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CDC27 domain containing protein	-	-	4.0e-06	20%
FL-Next	sp=DNA-binding protein BIN4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%
Blast2go	dna-binding protein bin4	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	82%
Blast2go	chromosome organization	GO:0051276	Biological Process	82%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	82%
Blast2go	positive regulation of cell growth	GO:0030307	Biological Process	82%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	82%
Blast2go	shoot development	GO:0048367	Biological Process	82%
Blast2go	double-stranded DNA binding	GO:0003690	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	DNA topoisomerase complex (ATP-hydrolyzing)	GO:0009330	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FLU1

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 88 - 454

Fln protein: CADDDKKAEVDIDDAVGAEEDLPEKRTEPRVASRLPLVFAEKVHRSKALLECEGEALDLSGDVGAVGRLVVSKTPTDDCEILLDIKGT

Protein Length: 89

Fln nts: TTGTGCAGATGATGATAAGAAGGCAGAAGTTGACATTGATGATGCTGTAGGAGCTGAAGAAGATCTTCCTGAGAAGCGGACAGAGCCTCGGGTTGCCTCAAGATTACCCTTGGTGTTTGCAGAAAAGGTTCATCGTTCAAAGGCACTTCTTGAATGCGAAGGGGAGGCTTTGGATTTAAGTGGAGATGTTGGTGCTGTGGGTCGTTTAGTTGTGTCTAAAACACCAACAGACGATTGTGAGATTTTATTGGACATCAAAGGGACATT

Fln Alignment:

biogeco3_mira_c20218___AEEDLPEKRTEPRV--ASRLPLVFAEKVHRSKALLECEGEALDLSGDVGAVGRLVVSKTPTDDCEILLDIKGT
Q9FLU1__________________AEEVTTDQKIKPSSGSSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTTGD---MYLDLKGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain