SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21777

Length: 293 nt

UniGene Fasta

>biog3_v1.0_unigene21777
AATGTATATGGGACCATGCTTTTCGGGAGCGCTTGCTAATTGATCCAAAGGAGCATTCTATATTGTTAGCTGAACCATCCTCCAATTCACAACAACAAAGGGAGAGAGCAGCAGAGCTTATGTTTGAAAGTCACAAGGTGCCAGCCCTATTCTTAGCAAGAATGCGGTATTAACTTCCTTTGCTTCTGGACGTCCCACTTCCTTAGTTGTTGACTGTGGTGGTGGATCGACAACTGTTGCTGCAGTCCATGATGGTTATGTTCTTCAAAAGGCTGTGGTGTCTTCTCCCATTG

Ace file of the UniGene biog3_v1.0_unigene21777

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene522	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Actin related protein n=2 Tax=Malpighiales RepID=B9I2R4_POPTR	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	actin-related protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	86%
Blast2go	long-day photoperiodism, flowering	GO:0048574	Biological Process	86%
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	86%
Blast2go	chromatin organization	GO:0006325	Biological Process	86%
Blast2go	structural constituent of cytoskeleton	GO:0005200	Molecular Function	86%
Blast2go	nucleolus	GO:0005730	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin-like	IPR004000	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ86

Fln msg: Separated hits, possible frame ERROR between 158 and 164, Distance to subject end: 195 aas, your sequence is shorter than subject: 97 - 377

Fln protein: CIWDHAFRERLLIDPKEHSILLAEPSSNSQQQRERAAELMFESHKVPALFLxxxAVLTSFASGRPTSLVVDCGGGSTTVAAVHDGYVLQKAVVSSPI

Protein Length: 98

Fln nts: AATGTATATGGGACCATGCTTTTCGGGAGCGCTTGCTAATTGATCCAAAGGAGCATTCTATATTGTTAGCTGAACCATCCTCCAATTCACAACAACAAAGGGAGAGAGCAGCAGAGCTTATGTTTGAAAGTCACAAGGTGCCAGCCCTATTCTTAGCxxxxxxTGCGGTATTAACTTCCTTTGCTTCTGGACGTCCCACTTCCTTAGTTGTTGACTGTGGTGGTGGATCGACAACTGTTGCTGCAGTCCATGATGGTTATGTTCTTCAAAAGGCTGTGGTGTCTTCTCCCATTG

Fln Alignment:

biogeco3_mira_c20180___IWDHAFRERLLIDPKEHSILLAEPSSNSQQQRERAAELMFESHKVPALFLAxxAVLTSFASGRPTSLVVDCGGGSTTVAAVHDGYVLQKAV
B8LQ86__________________IWHHTFNNELRVAPEDHPVLLTEPPLNPKANRERTTQIMFEVFNTPAMYIAxxAVLSLYASGRTTGIVLDSGDGVTHVVPIYEGYALPHAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain