SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21733

Length: 501 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21733
AATGTATCCACTTTGGAGTTGCGCGTTCTCAATGATTCAATGTATGCAACAGATTTTGAGGAAGATTTCTTCTTGAAGGTTACTGCAAGAATAAATTTTGGTGCCAGAAGTAAGGAACCCCTACGATATCCAGATGACCCTTATGATCGTATCTGGAACTCAGATGCAATTGAGCCAAACTATCTTGTTGGTGTGGCCCCTGGAACAAAGGCAGTCAGCACAACAAGGAACATTTTTACAAACACACATGAGCAACCACCGAACAAAGTGATGCAAACTGCAGTTGTTGGTACTCTTGGTAGTCTTACTTATCGGCTAAATCTTGAAGATTTCCCAGCTAATGCTCGTACTTATGCATACCTTGCTGAGATTGAGGATTTAGGTCCAAATGAAATGCGAAAATTTACCTTGCAGAAGCCATATGTGCCTTTTTACAGTACTATACCACTTAATATTCAGGAGAATGTTGGAAGCTATACACTTTATGAGCCAAGCTACATT

Ace file of the UniGene biog3_v1.0_unigene21733 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35872	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp\|C0LGI2.1\|Y1677_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g67720; Flags: Precursor gb\|ACN59267.1\| leucine-rich repeat receptor-like	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at1g67720-like	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLS6

Fln msg: Distance to subject end: 223 aas, your sequence is shorter than subject: 167 - 552

Fln protein: NVSTLELRVLNDSMYATDFEEDFFLKVTARINFGARSKEPLRYPDDPYDRIWNSDAIEPNYLVGVAPGTKAVSTTRNIFTNTHEQPPNKVMQTAVVGTLGSLTYRLNLEDFPANARTYAYLAEIEDLGPNEMRKFTLQKPYVPFYSTIPLNIQENVGSYTLYEPSYI

Protein Length: 168

Fln nts: AATGTATCCACTTTGGAGTTGCGCGTTCTCAATGATTCAATGTATGCAACAGATTTTGAGGAAGATTTCTTCTTGAAGGTTACTGCAAGAATAAATTTTGGTGCCAGAAGTAAGGAACCCCTACGATATCCAGATGACCCTTATGATCGTATCTGGAACTCAGATGCAATTGAGCCAAACTATCTTGTTGGTGTGGCCCCTGGAACAAAGGCAGTCAGCACAACAAGGAACATTTTTACAAACACACATGAGCAACCACCGAACAAAGTGATGCAAACTGCAGTTGTTGGTACTCTTGGTAGTCTTACTTATCGGCTAAATCTTGAAGATTTCCCAGCTAATGCTCGTACTTATGCATACCTTGCTGAGATTGAGGATTTAGGTCCAAATGAAATGCGAAAATTTACCTTGCAGAAGCCATATGTGCCTTTTTACAGTACTATACCACTTAATATTCAGGAGAATGTTGGAAGCTATACACTTTATGAGCCAAGCTACATT

Fln Alignment:

biogeco3_mira_c20115___VSTLELRVLNDSMYATDFEEDF-FLKVTARINFGARSKEPLRYPDDPYDRIWNSDAIEPNYLVGVAPGTKAVSTTRNIFTNTHEQPPNKVMQTAVVGTLGSLTYRLNLEDFPANARTYAYLAEIEDLGPNEMRKFTLQKPYVPFYSTIPL
B8LLS6__________________ISAIELRRLQDGMYQNNIGEGGRILVLQSRYDVGGNSV--VRYPQDKFDRIWTP-------FKSSGPSRNVSSKEPISTTNTENLPPTAVMQTASV-TLSETQPFLLDSTFDSAILLVLYFAEIETLNMSESRSFHVQLDGVQ-HSTITL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain