SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21691

Length: 1328 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene21691 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10747	34/35
SustainPine v2.0	sp_v2.0_unigene18170	1/35

Source	Descriptions	Term	Type	Identity
AutoFact	vesicle-associated membrane protein-associated protein [Triticum aestivum]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	vesicle-associated membrane	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	structural molecule activity	GO:0005198	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Major sperm protein	IPR000535	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Ribosomal protein L19	IPR001857	-	-
Sma3		IPR003612	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	PapD-like	IPR008962	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Vesicle-associated membrane protein	IPR016763	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABZ6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 51 aas, putative chimeric sequence, your sequence is shorter than subject: 185 - 237

Fln protein: MTNKDLLTIHPTELKFPFELKKQSSCSLQLVNNSDHYVAFKVKTTSPKKYCVRPNTGVVLPKSTCDVIVTMQSQREAPPDLQCKDKFLVQSVVAPYGVDQKDITQEMFNKEDGKVVEECKLRVVYAPPPQPPSPVPEGSEEGLSPRASDSGKQNTGLFEAAPKELGELKAKLTAGTDNAVKINR*

Protein Length: 186

Fln nts: AATGTCAATTACAGGGGCTTTGGAACTCTCTGAATTCGCGCGCTGTTGCAAAACCAGGAGCTGCATTGCTAGGGCAAAAAAATTGATTTCGCGTTTTGAGCGTTGGAGGAGCGGGTTTCTGGGAGCTTCAAGGTCCGGAAGATCCCAGGTCTTTTCTGGTTACCTCAATCGCCGCTTGGAAGTGTTAATCTGTTCGTGAAATGGGGCTTTGCAAAAGCTGATCTAAAGAGGTTGTTTTGAGGGTTGCGTTTGGCCTGGGAATTTGTACCGGGGTTCACGTTCAAGTTCAGGGTAAAGA_-_ATGACTAACAAGGATCTTCTGACGATTCATCCGACTGAACTTAAATTCCCGTTCGAACTGAAGAAGCAGAGTTCATGTTCTCTTCAGTTGGTAAATAACTCAGATCATTATGTGGCCTTCAAGGTGAAAACTACATCCCCAAAGAAGTATTGTGTACGACCCAACACTGGAGTTGTCCTGCCTAAGTCTACCTGTGATGTTATAGTCACCATGCAATCACAGCGAGAAGCCCCTCCTGATCTGCAGTGCAAAGACAAATTTCTTGTGCAGAGCGTTGTAGCACCTTATGGGGTAGATCAGAAGGATATCACTCAGGAAATGTTCAATAAGGAGGATGGGAAGGTTGTTGAGGAGTGCAAGCTCAGGGTGGTTTATGCTCCTCCACCCCAACCTCCTTCTCCAGTTCCTGAAGGATCAGAAGAGGGCCTATCTCCAAGGGCATCTGACAGTGGAAAACAGAATACTGGCTTGTTTGAAGCGGCGCCCAAAGAACTTGGTGAATTGAAGGCAAAACTTACTGCAGGCACGGACAATGCTGTCAAAATTAACAGATGA___AAGGAACACAGTTGGTTTTCTAGGTATTCTAGTTGGTTACCTTGTTAGTGCATAGATATTGATGTAACCATTTCCGTCACTGTTAGAAAGATAAAGTGTTTGGGGTGCAAAGGTTTTGTTCGAAAGTTTTTCTAAAAGCATGAAGCATATTTGGTGACCTTTGCGTTAGGTATTTGCTGCTTGAATACGTAATTTTTGTTATGAATGCTATTGTTGAGCTCCAGCATATTAAGAGAGAAGCTCAGACATTGTCAAAGTGAAGTTGCAATACGGTTGGGTAGTTGTGCAGTCTAAACACCTGCCTGGTAAGGTTTTGACTGGTGTACAATTCTATGGATTGAGTATAGCATAGAGAGTGTGCTAAGAATGAAATCATGAATGCTTTCTAGAACACAGCAAAGCTCGATTCTGTTCGTGAAGCCAGCCTGTTCATCCTTCAAACAGGCTGCCTGCTTCTTTTATTCCAAAGGACATT

Fln Alignment:

biogeco3_mira_c20050___MTNKDLLTIHPTELKFPFELKKQSSCSLQLVNNSDHYVAFKVKTTSPKKYCVRPNTGVVLPKSTCDVIVTMQSQREAPPDLQCKDKFLVQSVVAPYGVDQKDITQEMFNKEDGKVVEECKLRVVYAXXXXXXXXXXXXXXXXXXPRA--SDSGKQNTGLFEAAPKELGELKAKLT
D5ABZ6__________________MSNRELLTIHPTELKFPFELKKQSSCSLQLVNNSDHYVAFKVKTTSPKKYCVRPNTGVVLPKSTCDVIVTMQSQREAPPDLQCKDKFLVQSVVAPYGVDQKDITQEMFNKEEGKVIEECKLRVVYAPPPQPPSPVPEGSEEGLSPRALPSDSGKQNTGLFEVAPKELGELKAKLT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1102	75		25		0.996483
1103	75			25	0.996483
1148		50	50		1.0
1151		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain