SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21663

Length: 316 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21663
GGAACTTGAAATTCTTGGAAGTGTCAAACATCGCCATCTTGTGAATTTGCGGGGCTATTGTAATGGTCCTTCGGCAAATCTTCTAATATATGACTTTCTAGCTGGGGGGAACTTGGATGAAATGCTTCATGGAACTCATGATCGACCTCTTGATTGGGACGCTCGGGTCAAAATTGCCATTGGAGCAGCAAAGGGTCTGGCATACTTGCACCATGACTGCTCCCCTCGTATCATACATCGTGATATCAAATCCAGCAACATATACATTGACAGGAACTTGGAATCCCATGTAGCTGATTTTGGGCTTGCCAAGCTG

Ace file of the UniGene biog3_v1.0_unigene21663 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8476	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] gb\|AEE31353.1\| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	leucine-rich repeat protein kinase-like protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	77%
Blast2go	Receptor protein-tyrosine kinase.	EC:2.7.10.1	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	77%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	77%
Blast2go	plant-type cell wall organization	GO:0009664	Biological Process	77%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	transmembrane receptor protein tyrosine kinase activity	GO:0004714	Molecular Function	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 105 - 656

Fln protein: ELEILGSVKHRHLVNLRGYCNGPSANLLIYDFLAGGNLDEMLHGTHDRPLDWDARVKIAIGAAKGLAYLHHDCSPRIIHRDIKSSNIYIDRNLESHVADFGLAKL

Protein Length: 106

Fln nts: GGAACTTGAAATTCTTGGAAGTGTCAAACATCGCCATCTTGTGAATTTGCGGGGCTATTGTAATGGTCCTTCGGCAAATCTTCTAATATATGACTTTCTAGCTGGGGGGAACTTGGATGAAATGCTTCATGGAACTCATGATCGACCTCTTGATTGGGACGCTCGGGTCAAAATTGCCATTGGAGCAGCAAAGGGTCTGGCATACTTGCACCATGACTGCTCCCCTCGTATCATACATCGTGATATCAAATCCAGCAACATATACATTGACAGGAACTTGGAATCCCATGTAGCTGATTTTGGGCTTGCCAAGCTG

Fln Alignment:

biogeco3_mira_c20007___ELEILGSVKHRHLVNLRGYCNGPSANLLIYDFLAGGNLDEMLHGTHDRPLDWDARVKIAIGAAKGLAYLHHDCSPRIIHRDIKSSNIYIDRNLESHVADFGLAKL
C0PRI9__________________EVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPNMEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain