SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21644

Length: 474 nt

UniGene Fasta

>biog3_v1.0_unigene21644
AATGTCCTTCGACCCTGCTTTCGATGGATTCAAGCGCCCACGAAGAGTGCGAAACCGCCAGACAAACGGTAGTTGTAGACCCCCTGATATTAACCTGCCATTATCGGTGGAGATAAGCCCTTTGCCATTTTGTGTGAATGATTCTTCTGACATTTTGGAGGCCGGTTTGGGGTCCCATAACCAGGAGCCAGAAGGGCTCCAGAGTCTCTCTAAAGTTGGCAAGAAGTGTGCCAGGCGGGGGGATAGCATTTGGGGCGCATGGTTTTTCTTCAATTACTACTTTAAGCCCGCCCTCGTTGAAAAAGCCAAGAACAAGCTTACAGAAGAGGGTGCAAGCTCCTGTATGTTTGAGAAATCAGACCTCCGCCTTGATTTGTTCCTGGTTCAACATGATATTGAGAATATGTATATGTGGATCTTCAAGGAGAGGCCTGAAAATGCATTGGGCAAGATGCAGCTTCGTAGCTATATGAA

Ace file of the UniGene biog3_v1.0_unigene21644

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4260	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein sodium-and lithium-tolerant 1 [Arabidopsis thaliana] gb\|AAC23628.1\| expressed protein [Arabidopsis thaliana] gb\|AAG39003.1\| SLT1 protein [Arabidopsis thaliana] gb\|AAK96858.1\| Unknown protein [Arabidopsis thaliana] gb\|AAM10070.1\| unknown protein [A	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	65%
Blast2go	protein sodium-and lithium-tolerant 1	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Membrane insertion protein, OxaA/YidC	IPR001708	-	-
Sma3	Heat shock protein Hsp20	IPR002068	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SP16

Fln msg: Distance to subject end: 325 aas, your sequence is shorter than subject: 157 - 502

Fln protein: MSFDPAFDGFKRPRRVRNRQTNGSCRPPDINLPLSVEISPLPFCVNDSSDILEAGLGSHNQEPEGLQSLSKVGKKCARRGDSIWGAWFFFNYYFKPALVEKAKNKLTEEGASSCMFEKSDLRLDLFLVQHDIENMYMWIFKERPENALGKMQLRSYM

Protein Length: 158

Fln nts: AATGTCCTTCGACCCTGCTTTCGATGGATTCAAGCGCCCACGAAGAGTGCGAAACCGCCAGACAAACGGTAGTTGTAGACCCCCTGATATTAACCTGCCATTATCGGTGGAGATAAGCCCTTTGCCATTTTGTGTGAATGATTCTTCTGACATTTTGGAGGCCGGTTTGGGGTCCCATAACCAGGAGCCAGAAGGGCTCCAGAGTCTCTCTAAAGTTGGCAAGAAGTGTGCCAGGCGGGGGGATAGCATTTGGGGCGCATGGTTTTTCTTCAATTACTACTTTAAGCCCGCCCTCGTTGAAAAAGCCAAGAACAAGCTTACAGAAGAGGGTGCAAGCTCCTGTATGTTTGAGAAATCAGACCTCCGCCTTGATTTGTTCCTGGTTCAACATGATATTGAGAATATGTATATGTGGATCTTCAAGGAGAGGCCTGAAAATGCATTGGGCAAGATGCAGCTTCGTAGCTATATGAA

Fln Alignment:

biogeco3_mira_c19980___RPPDINLPLSVEISPLPFCVN-DSSDILEAGLGSHNQEPEGLQSLSKVGKKCARRGDSIWGAWFFFNYYFKPALVEKAKNKLTEEGASSCMFEKSDLRLDLFLVQHDIENMYMWIFKERPENALGKMQLRSYM
B9SP16__________________RPPDINLPLSVERSPPPQSWNSDPCDILDVGLGQQVYETESFLNVPKVGRKCAKRIDSIWGAWFFFNFYFKPALNEKSKAKIVRDSNGVSRFDKSDLKLEVFMVQHDMENMYMWVFKDRPENALGKMQLRSYM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain