SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21540

Length: 247 nt

UniGene Fasta

>biog3_v1.0_unigene21540
AATGTATACAATAAGCAGGTCCAAAAACAGCAGCACTTATTCTCCAATGAGCAATGTTCCTCTTCAACCTGGAAGAAAAGTTGGTGCAGGGAAGTATATTCTAACAGCAGGGTTTGGCACACCAGCTAAGAATTTGTTGCTGATAATTGACACGGGCAGCGATGTGACATGGATACAATGCAACCCTTGTTCAGACTGTTATTCGCAGGTAGATCCCATATTCAATCCCCAGCAGTCATCTTCGTAT

Ace file of the UniGene biog3_v1.0_unigene21540

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6306	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00026, Asp, Eukaryotic aspartyl protease	-	-	1.0e-25	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	60%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	0.0	60%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	0.0	-
Sma3	Peptidase A1	IPR001461	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV32

Fln msg: Distance to subject end: 291 aas, your sequence is shorter than subject: 82 - 479

Fln protein: MYTISRSKNSSTYSPMSNVPLQPGRKVGAGKYILTAGFGTPAKNLLLIIDTGSDVTWIQCNPCSDCYSQVDPIFNPQQSSSY

Protein Length: 83

Fln nts: AATGTATACAATAAGCAGGTCCAAAAACAGCAGCACTTATTCTCCAATGAGCAATGTTCCTCTTCAACCTGGAAGAAAAGTTGGTGCAGGGAAGTATATTCTAACAGCAGGGTTTGGCACACCAGCTAAGAATTTGTTGCTGATAATTGACACGGGCAGCGATGTGACATGGATACAATGCAACCCTTGTTCAGACTGTTATTCGCAGGTAGATCCCATATTCAATCCCCAGCAGTCATCTTCGTAT

Fln Alignment:

biogeco3_mira_c19829___SKNSSTYSPMSNVPLQPGRKVGAGKYILTAGFGTPAKNLLLIIDTGSDVTWIQCNPCSDCYSQVDPIFNPQQSSSY
A9NV32__________________SKNNGTYSTMSNLPLQPGSKVGTGNYIVTAGFGTPAKNSLLIIDTGSDVTWIQCKPCSDCYSQVDPIFEPQQSSSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain