SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21536

Length: 263 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21536
ATTTACCTCCACTTTGGTGGCTCAAGCTTTCATGGACTAGATCTTCAAACTGCATGGCACGCGAACGTCCATTGCGTCTAATCACGACCCCACTTTCACCAGCAAATTTTGGCAAGAACTTTTCAAGCTACAAGGCACACAACTCCAACTAAGTACCGCCTATCATCCCTAGACCGATGGTCAAACAGAAGCAATCAACAAATACTTGGAGACATATCTAAGGTGCTTCACTTCAGAAAAGCAGCATCAATGGGTACAACATT

Ace file of the UniGene biog3_v1.0_unigene21536 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene38687	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI	-	-	5.0e-37	81%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	56%
Blast2go	pol protein integrase region	-	-	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Protein of unknown function DUF594	IPR007658	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A5C7Y5

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 87 - 245

Fln protein: FTSTLVAQAFMD*IFKLHGTRTSIASNHDPTFTSKFWQELFKLQGTQLQLSTAYHP*TDGQTEAINKYLETYLRCFTSEKQHQWVQH

Protein Length: 88

Fln nts: ATTTACCTCCACTTTGGTGGCTCAAGCTTTCATGGACTAGATCTTCAAACTGCATGGCACGCGAACGTCCATTGCGTCTAATCACGACCCCACTTTCACCAGCAAATTTTGGCAAGAACTTTTCAAGCTACAAGGCACACAACTCCAACTAAGTACCGCCTATCATCCCTAGACCGATGGTCAAACAGAAGCAATCAACAAATACTTGGAGACATATCTAAGGTGCTTCACTTCAGAAAAGCAGCATCAATGGGTACAACATT

Fln Alignment:

biogeco3_mira_c19825___FTSTLVAQAFMD*IFKLHGTRTSIASNHDPTFTSKFWQELFKLQGTQLQLSTAYHP*TDGQTEAINKYLETYLRCFTSEKQHQWVQ
A5C7Y5__________________YTAFGVARIFFDSIFRLHGVPRSIVCDRDPTFTSAFWRELFSLQGTTFNFSSSYHPQTDGQTEVVNQTLEMYLRCFTSSRPNEWVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain