SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21534

Length: 352 nt

UniGene Fasta

>biog3_v1.0_unigene21534
AAGAGATCAAGACAGCTGATGGGATTGACAATGTAGACAGTTCTGAAGTTTCTATATCGTTAGCCTTGGTTGATGCATTAGATGTGCTGCAAGGTCAACTAAAGAACTTGAAACAGGTCCTCAATGATGTTGATTTTATGGATCTCTGGCGAAGTTTGGCCAGTGGTTTAGATCAATTTCTTTTTACTAATATCCTTTTGAGCAATGCTAAATTTTCAAATTATGGTGTTCGCCAGTTTGAGGCTGATATGCATGCATTGTTCCACATCTTTAAGCCATTCTGTGTTCGCCCTACAGGTTTTTTCCCACATCTAGGTGATTCATTAAGGTTGCTAGCCATGCCATCTGCTGA

Ace file of the UniGene biog3_v1.0_unigene21534

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6885	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RINT-1 / TIP-1 domain-containing MAG2 protein [Arabidopsis thaliana] emb\|CAB41853.1\| putative protein [Arabidopsis thaliana] gb\|AEE78320.1\| RINT-1 / TIP-1 domain-containing MAG2 protein [Arabidopsis thaliana]	-	-	9.0e-35	37%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	51%
Blast2go	rad50-interacting protein	-	-	4.12458e-41	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	4.12458e-41	56%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	4.12458e-41	56%
Blast2go	cytosol	GO:0005829	Cellular Component	4.12458e-41	56%
Blast2go	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	4.12458e-41	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T2W6

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 116 - 829

Fln protein: EIKTADGIDNVDSSEVSISLALVDALDVLQGQLKNLKQVLNDVDFMDLWRSLASGLDQFLFTNILLSNAKFSNYGVRQFEADMHALFHIFKPFCVRPTGFFPHLGDSLRLLAMPSA

Protein Length: 117

Fln nts: AAGAGATCAAGACAGCTGATGGGATTGACAATGTAGACAGTTCTGAAGTTTCTATATCGTTAGCCTTGGTTGATGCATTAGATGTGCTGCAAGGTCAACTAAAGAACTTGAAACAGGTCCTCAATGATGTTGATTTTATGGATCTCTGGCGAAGTTTGGCCAGTGGTTTAGATCAATTTCTTTTTACTAATATCCTTTTGAGCAATGCTAAATTTTCAAATTATGGTGTTCGCCAGTTTGAGGCTGATATGCATGCATTGTTCCACATCTTTAAGCCATTCTGTGTTCGCCCTACAGGTTTTTTCCCACATCTAGGTGATTCATTAAGGTTGCTAGCCATGCCATCTGCTGA

Fln Alignment:

biogeco3_mira_c19821___SEVSISLALVDALDVLQGQLKNLKQVLNDVDFMDLWRSLASGLDQFLFTNILLSNAKFSNYGVRQFEADMHALFHIFKPFCVRPTGFFPHLGDSLRLLAM
B9T2W6__________________TDLAISTDIVEALDTIKSELRILKLSLNPKDFFDLWRSVADGLDHFISSSILVSDILFSSFGINQFEADMQALFFVFQPFCARPDAFFPCIRETIRLLKM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain