SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21532

Length: 389 nt

UniGene Fasta

>biog3_v1.0_unigene21532
AATGTAAGATTGGAGTGAAGTCCCCTCCCTCTGGAATAGCTACTAATTTGGAGGATTGTTTTAAGATAGCGGAATCTATTGGGGAATACCCACTTATCATCCGCCCCGCTTTCACACTTGGAGGGACAGGTGGGGGGATTGCCTACAACAGAGATGAGTTTGAGTCAATCTGCAAGGCTGGACTGAGTGCCAGCATAACTTCTCAGGTACTAGTGGAAAAATCCCTCCTGGGCTGGAAGGAATACGAGCTTGAGGTCATGAGGGATTTGGCTGACAATGTGGTGATCATATGCTCCATAGAGAATGTTGATCCCATGGGCATTCATACCGGGGATTCTATCACCGTGGCTCCGGCGCAGACTCTGACTGATAAGGAGTATCAGCGTCTG

Ace file of the UniGene biog3_v1.0_unigene21532

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11435	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative carbamoyl phosphate synthase large subunit n=1 Tax=Nicotiana tabacum RepID=Q8L6J9_TOBAC	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	90%
Blast2go	carbamoyl-phosphate synthase large chain-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carbamoyl-phosphate synthase (glutamine-hydrolyzing).	EC:6.3.5.5	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		87%
Blast2go	Alanine, aspartate and glutamate metabolism	00250		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Carbamoyl-phosphate synthase (ammonia).	EC:6.3.4.16	-	87%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	87%
Blast2go	Arginine and proline metabolism	00330	87%
Blast2go	Nitrogen metabolism	00910	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	arginine biosynthetic process	GO:0006526	Biological Process	87%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	87%
Blast2go	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	GO:0004088	Molecular Function	87%
Blast2go	carbamoyl-phosphate synthase (ammonia) activity	GO:0004087	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	IPR005480	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, CPS-domain	IPR005483	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit	IPR006275	-	-
Sma3	Methylglyoxal synthase-like domain	IPR011607	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-
Sma3	Alcohol dehydrogenase, iron-type, conserved site	IPR018211	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SDC5

Fln msg: Distance to subject end: 835 aas, your sequence is shorter than subject: 129 - 1194

Fln protein: CKIGVKSPPSGIATNLEDCFKIAESIGEYPLIIRPAFTLGGTGGGIAYNRDEFESICKAGLSASITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGIHTGDSITVAPAQTLTDKEYQRL

Protein Length: 130

Fln nts: AATGTAAGATTGGAGTGAAGTCCCCTCCCTCTGGAATAGCTACTAATTTGGAGGATTGTTTTAAGATAGCGGAATCTATTGGGGAATACCCACTTATCATCCGCCCCGCTTTCACACTTGGAGGGACAGGTGGGGGGATTGCCTACAACAGAGATGAGTTTGAGTCAATCTGCAAGGCTGGACTGAGTGCCAGCATAACTTCTCAGGTACTAGTGGAAAAATCCCTCCTGGGCTGGAAGGAATACGAGCTTGAGGTCATGAGGGATTTGGCTGACAATGTGGTGATCATATGCTCCATAGAGAATGTTGATCCCATGGGCATTCATACCGGGGATTCTATCACCGTGGCTCCGGCGCAGACTCTGACTGATAAGGAGTATCAGCGTCTG

Fln Alignment:

biogeco3_mira_c19818___KIGVKSPPSGIATNLEDCFKIAESIGEYPLIIRPAFTLGGTGGGIAYNRDEFESICKAGLSASITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGIHTGDSITVAPAQTLTDKEYQRL
D8SDC5__________________KIGVKTPPSGIATTLEECFQIAETIGEFPLIIRPAFTLGGTGGGIAYNREELETICKAGLTASITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain