SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21518

Length: 238 nt

UniGene Fasta

>biog3_v1.0_unigene21518
AATGTCTTGATGCTTTGGAAGCCTGCAGCAGCTGTTTATCCAAGACTGATTGAACGGGCTCCAGGAGGGTTAACCTTCGAAGAAGCAAAAGAATTACGTAAAAGGGGACGGTCACTGCTTTGTATCTGCAAACTCTCAAAAAATGGTGTGTATTTGAATCTTGCAAAGGATGTTAGAGATGCCTTTGAAGTAAGTGATCTGGTTCGGGTAAATTGTCAAGGCTTAAATCCAAGTGATT

Ace file of the UniGene biog3_v1.0_unigene21518

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58385	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRS2-associated factor 2, chloroplastic n=2 Tax=Arabidopsis RepID=CAF2P_ARATH	-	-	3.0e-39	72%
FL-Next	sp=CRS2-associated factor 2, chloroplastic; Zea mays (Maize).	-	-	0.0	68%
Blast2go	crs2-associated factor 2	-	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	Group II intron splicing	GO:0000373	Biological Process	0.0	83%
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA-binding, CRM domain	IPR001890	-	0.0	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84N48

Fln msg: Distance to subject end: 204 aas, your sequence is shorter than subject: 79 - 611

Fln protein: NVLMLWKPAAAVYPRLIERAPGGLTFEEAKELRKRGRSLLCICKLSKNGVYLNLAKDVRDAFEVSDLVRVNCQGLNPSD

Protein Length: 80

Fln nts: AATGTCTTGATGCTTTGGAAGCCTGCAGCAGCTGTTTATCCAAGACTGATTGAACGGGCTCCAGGAGGGTTAACCTTCGAAGAAGCAAAAGAATTACGTAAAAGGGGACGGTCACTGCTTTGTATCTGCAAACTCTCAAAAAATGGTGTGTATTTGAATCTTGCAAAGGATGTTAGAGATGCCTTTGAAGTAAGTGATCTGGTTCGGGTAAATTGTCAAGGCTTAAATCCAAGTGATT

Fln Alignment:

biogeco3_mira_c19793___LMLWKPAAAVYPRLIERAPGGLTFEEAKELRKRGRSLLCICKLSKNGVYLNLAKDVRDAFEVSDLVRVNCQGLNPSD
Q84N48__________________LMLWKPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain