SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21499

Length: 335 nt

UniGene Fasta

>biog3_v1.0_unigene21499
AATGTCGTAACAATGCTTCCAGTTTCTGCTGTTGCACGACCTACTGCCGTAATAATGCTTTGTGTTTCTGCTGTGCACGACCTGCTTCCACAACCTGCTGCATAACAATGAACAAATGCTTTCGTCTGGCCTTACAACTCATCAGCTACCCAACGGGGGTTTGAAGCTTAGGGTTGTGTCGACTATCAGTTCCCTGATAGCCACATCTGCCAGGCACTTTCTTTTACAACAGATAATTTCTAATCACCTTACCTTGCAGAGCCTCGTTCTCACTGATTTTGATGCCCAGGGGGTTCTCTGTATGGGAAAAGATCAGTTACAGGAGCTTCACGATA

Ace file of the UniGene biog3_v1.0_unigene21499

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8747	1/2
SustainPine v2.0	sp_v2.0_unigene35366	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q9FNK5.1\|FB285_ARATH RecName: Full=F-box protein At5g46170 dbj\|BAB08262.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL49842.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13195.1\| unknown protein [Arabido	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	f-box family protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	heat acclimation	GO:0010286	Biological Process	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW74

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 86 aas, your sequence is shorter than subject: 111 - 361

Fln protein: MS*QCFQFLLLHDLLP**CFVFLLCTTCFHNLLHNNEQMLSSGLTTHQLPNGGLKLRVVSTISSLIATSARHFLLQQIISNHLTLQSLVLTDFDAQGVLCMGKDQLQELHD

Protein Length: 112

Fln nts: AATGTCGTAACAATGCTTCCAGTTTCTGCTGTTGCACGACCTACTGCCGTAATAATGCTTTGTGTTTCTGCTGTGCACGACCTGCTTCCACAACCTGCTGCATAACAATGAACAAATGCTTTCGTCTGGCCTTACAACTCATCAGCTACCCAACGGGGGTTTGAAGCTTAGGGTTGTGTCGACTATCAGTTCCCTGATAGCCACATCTGCCAGGCACTTTCTTTTACAACAGATAATTTCTAATCACCTTACCTTGCAGAGCCTCGTTCTCACTGATTTTGATGCCCAGGGGGTTCTCTGTATGGGAAAAGATCAGTTACAGGAGCTTCACGATA

Fln Alignment:

biogeco3_mira_c19768___NGGLKLRVVSTISSLIATSARHFLLQQIISNHLTLQSLVLTDFDAQGVLCMGKDQLQELHD
A9NW74__________________DGGLKLRVVWTISSLIAASARHYLLQQIISDHPTLQNLVLTDADGQGMLCMGKAQLREFRD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain